PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G129100.1.p

Common Name

SETIT_038591mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 435aa MW: 44480 Da PI: 6.9194

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G129100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	368	390	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cg+ +++ L H+r+H Seita.9G129100.1.p 368 YKCKVCGTECPTGRALGGHMRKH 390 9*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	7	200	222	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0016	200	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.35E-5	200	222	No hit	No description
PROSITE pattern	PS00028	0	202	222	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.35E-5	363	390	No hit	No description
SMART	SM00355	0.0086	368	390	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.577	368	395	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.5E-6	368	392	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	370	390	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MVVVVEGEEY YSDSDSDDDV DRYVFLARPP APAAGRRHAE DDRGASSAND DDDGDGDATG 60 DEEEPERGGG RTKRRPLGRE ILDGAPPPPP PKRARLELIA PPFAQTPPSV SGSETESDSA 120 ALPCVDVRAG ESGSEGSHDH EKVHGRRAPG KGGEANNATK RKRGACGKRG RGPGCEADGD 180 RAVTAAAKAG APPAATSGRF LCNLCERCFD SFQALGGHVL GHRKKAKVAI AAAASLDVDD 240 AGGVIGNCKE EAAVVEANEE TANGIAQAGK MVAVAARRGK ANGGGGSGGG CHDKIKTVDG 300 VAEHRDDVGF GNKGNGIAVS SHCFTNGGNS RCNEKTGIGA AISNQKAVVG SCHEGANGDG 360 NGVRRTLYKC KVCGTECPTG RALGGHMRKH RKRPPPGGDG GGGEGRSPSP ATDGDFQMPL 420 SRLFVPRENT IGLI*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MVVVVEGEEY YSDSDSDDDV DRYVFLARPP APAAGRRHAE DDRGASSAND DDDGDGDATG  60
DEEEPERGGG RTKRRPLGRE ILDGAPPPPP PKRARLELIA PPFAQTPPSV SGSETESDSA  120
ALPCVDVRAG ESGSEGSHDH EKVHGRRAPG KGGEANNATK RKRGACGKRG RGPGCEADGD  180
RAVTAAAKAG APPAATSGRF LCNLCERCFD SFQALGGHVL GHRKKAKVAI AAAASLDVDD  240
AGGVIGNCKE EAAVVEANEE TANGIAQAGK MVAVAARRGK ANGGGGSGGG CHDKIKTVDG  300
VAEHRDDVGF GNKGNGIAVS SHCFTNGGNS RCNEKTGIGA AISNQKAVVG SCHEGANGDG  360
NGVRRTLYKC KVCGTECPTG RALGGHMRKH RKRPPPGGDG GGGEGRSPSP ATDGDFQMPL  420
SRLFVPRENT IGLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G129100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368SFZ2	0.0	A0A368SFZ2_SETIT; Uncharacterized protein
STRING	Si038591m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18613	2	2

Link Out ? help Back to Top
Phytozome	Seita.9G129100.1.p