PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G123400.1.p
Common NameLOC101772815, SETIT_038692mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 370aa    MW: 39474.2 Da    PI: 7.993
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G123400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP160.96.8e-501132731136
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k ai+e++ +  +++sec e++sss s++ + ++  
  Seita.9G123400.1.p 113 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKSAIQEIMTD--DASSECvEDGSSSLSVDGKPNPae 201
                         589**************************************************************..666679999999999995555566 PP

                 TCP  89 .......................kaaksaakskksq.ksaasalnlakesrakarararertrekmriknkl 136
                                                ka+k a+++k+++ +s +++  ++ke+rakar+rarert+ek+r+++++
  Seita.9G123400.1.p 202 llgggdqqpnkgngrsgegkkpaKARKPATTPKPPRkSSVNAHPVPDKETRAKARERARERTKEKHRMRWVK 273
                         777777777788999999999974444444555554055555666777*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-46115269IPR005333Transcription factor, TCP
PROSITE profilePS5136935.147116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.593249266IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MFPFCDSSSP MDLPLYQQLQ LSPPSPKPDQ STGFFYYPCS PPFAAADASF HLSYQLGSAA  60
AATPPQAVID SPELPLQPVM EQAPAPAPAA ELDLDAACAN AQGAGAGLDR AAAAARKDRH  120
SKICTAGGMR DRRMRLSLDV ARKFFALQDM LGFDKASKTV QWLLNTSKSA IQEIMTDDAS  180
SECVEDGSSS LSVDGKPNPA ELLGGGDQQP NKGNGRSGEG KKPAKARKPA TTPKPPRKSS  240
VNAHPVPDKE TRAKARERAR ERTKEKHRMR WVKLASAIDV EAAAASVARD RPSSNNLSHH  300
ASSNMACAAA ELEERCSSTL NNGGRMQEIT GSSDVILPFG NGGYGAGNYY CQEQWDLGGV  360
VFQQNSRFY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G123400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6941240.0EF694124.2 Pennisetum glaucum isolate Tb46 teosinte-branched1 (Tb1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982035.10.0transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI21e-180TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLK4AII00.0K4AII0_SETIT; Uncharacterized protein
STRINGSi038692m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-24TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]