PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G113900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19573.7 Da PI: 11.1296 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW +eE++++++a ++G + Wk+I + + ++t q++s+ qk+ Seita.9G113900.2.p 76 RERWVAEEHDRFLHALVLFGRD-WKRIEAFVA-TKTSTQIRSHAQKH 120 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.76E-15 | 70 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.609 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-8 | 75 | 123 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.3E-15 | 75 | 123 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.6E-10 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 76 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-7 | 78 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MFTHTLNTGA NSRTLKTQLS PPTGFYLCFF CCSIRKRDRQ SESERDIYTM MMAAPAKSIG 60 MAGKKPRKPY TITRPRERWV AEEHDRFLHA LVLFGRDWKR IEAFVATKTS TQIRSHAQKH 120 FLRAQKLGLS VAPLPHPRRA AAAGVRQADE TIQLPLSPDD PHFALVCRGK AR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G113900.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678661.1 | 1e-122 | protein REVEILLE 6 | ||||
Swissprot | Q8RWU3 | 4e-29 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A368SFG2 | 1e-125 | A0A368SFG2_SETIT; Uncharacterized protein | ||||
STRING | Si038786m | 1e-79 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 2e-27 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G113900.2.p |
Publications ? help Back to Top | |||
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