PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G113800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 181aa MW: 20182.3 Da PI: 9.5831 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5e-12 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW ++E++++++a ++G + Wk+I + + ++t q++s+ qk+ Seita.9G113800.1.p 25 RERWAADEHDRFLHALVLFGRD-WKRIEAFVA-TKTSTQIRSHAQKH 69 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.57E-14 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.566 | 20 | 74 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-15 | 24 | 72 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-7 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-9 | 25 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 25 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-6 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MPAAARSIVM AGKKTRKPYT ITRPRERWAA DEHDRFLHAL VLFGRDWKRI EAFVATKTST 60 QIRSHAQKHF LKAQKLGITP PPPHPRLAAV LAQPPVSCPP AWFPGDAMAR SDETLIQLPL 120 SPDELYFAQV YRFVGDIFGS DAPQPVETQL QRLVGADPVI VDTILRVLGN LEENLSLWDV 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G113800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981960.1 | 1e-130 | protein REVEILLE 8-like | ||||
Swissprot | Q8RWU3 | 4e-27 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A368SFM7 | 1e-129 | A0A368SFM7_SETIT; Uncharacterized protein | ||||
STRING | Sb01g012460.1 | 6e-72 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 2e-29 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G113800.1.p |
Publications ? help Back to Top | |||
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