PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G107700.2.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRF

Protein Properties

Length: 546aa MW: 58565.2 Da PI: 7.2758

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G107700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.9	8.3e-24	167	210	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Seita.9G107700.2.p 167 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 210 69***************************************986 PP
2	QLQ	59.6	9e-21	99	135	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+P+ Ll++i++ Seita.9G107700.2.p 99 GPFTPSQWIELEHQALIYKYLAANIPIPHSLLVPIRR 135 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.3E-12	99	135	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.009	100	135	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-14	100	134	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	166	210	IPR014977	WRC domain
Pfam	PF08879	4.5E-20	168	209	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MDITYESVLL IRFLILAAST LFQIFVSFSC LYPALGLCLG NACISVVISM KQYMFLAVPC 60 WLSLLCCSSL TLPACFIPAG LSSVSLSSSM QGAMARVRGP FTPSQWIELE HQALIYKYLA 120 ANIPIPHSLL VPIRRSLASS PYPPSYFGTS TLGWGSFQLG YSGNADLEPG RCRRTDGKKW 180 RCSRDAVADQ KYCERHMNRG RHRSRKHVEG QPGHAAKAMS AAVAAAAATQ PAALAASGAG 240 ATAAGLTVSQ HQQPVKSYAA GATDPCSLQY NRELVNKQNE SDNMQDSDNL SMLTSMSTRN 300 PGSLFPFSKQ NNPFEVTSSR PEFGLVSSDS LMSSPHSSLE NVNLLSSQSL NENQSSASLQ 360 HFVDWPRTPA QGGLSWPDAE DMQAQRSQLS VSAPMASSEL SSASTSPIHE KLMLSPLKLS 420 REYSPIGLSI AASRDEVSQL EANWATMFRD SSMGGPLGEV LTKNGNAEAK NCLSAPLNLL 480 TDFWDSSPGM ESSPVGVLQK TTFGSVSSST GSSPRMENHG AYDGISNLRD DLGSIVVSHP 540 NIRLL*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MDITYESVLL IRFLILAAST LFQIFVSFSC LYPALGLCLG NACISVVISM KQYMFLAVPC  60
WLSLLCCSSL TLPACFIPAG LSSVSLSSSM QGAMARVRGP FTPSQWIELE HQALIYKYLA  120
ANIPIPHSLL VPIRRSLASS PYPPSYFGTS TLGWGSFQLG YSGNADLEPG RCRRTDGKKW  180
RCSRDAVADQ KYCERHMNRG RHRSRKHVEG QPGHAAKAMS AAVAAAAATQ PAALAASGAG  240
ATAAGLTVSQ HQQPVKSYAA GATDPCSLQY NRELVNKQNE SDNMQDSDNL SMLTSMSTRN  300
PGSLFPFSKQ NNPFEVTSSR PEFGLVSSDS LMSSPHSSLE NVNLLSSQSL NENQSSASLQ  360
HFVDWPRTPA QGGLSWPDAE DMQAQRSQLS VSAPMASSEL SSASTSPIHE KLMLSPLKLS  420
REYSPIGLSI AASRDEVSQL EANWATMFRD SSMGGPLGEV LTKNGNAEAK NCLSAPLNLL  480
TDFWDSSPGM ESSPVGVLQK TTFGSVSSST GSSPRMENHG AYDGISNLRD DLGSIVVSHP  540
NIRLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G107700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063759	0.0	BT063759.1 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981896.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A368SFF8	0.0	A0A368SFF8_SETIT; Uncharacterized protein
STRING	Si034822m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-49	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Seita.9G107700.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]