PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G107700.1.p

Common Name

LOC101785488, SETIT_034822mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRF

Protein Properties

Length: 591aa MW: 61607.7 Da PI: 7.0543

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G107700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.2e-24	212	255	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Seita.9G107700.1.p 212 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 255 69***************************************986 PP
2	QLQ	59.5	9.9e-21	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+P+ Ll++i++ Seita.9G107700.1.p 144 GPFTPSQWIELEHQALIYKYLAANIPIPHSLLVPIRR 180 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.3E-12	144	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-14	145	179	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.009	145	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	211	255	IPR014977	WRC domain
Pfam	PF08879	5.0E-20	213	254	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MELGGVVMDA GGGAAELGLL GGGSSRLLKH GRGNAAGEEH GWGGSGRAAK QARTTADVAE 60 AAKAAVAPFL LGSCSPGHGG EQMLSFSSAP ASSCASTAAV AAAAAAVAAD GAMPLYYGTP 120 ASCSGLSSVS LSSSMQGAMA RVRGPFTPSQ WIELEHQALI YKYLAANIPI PHSLLVPIRR 180 SLASSPYPPS YFGTSTLGWG SFQLGYSGNA DLEPGRCRRT DGKKWRCSRD AVADQKYCER 240 HMNRGRHRSR KHVEGQPGHA AKAMSAAVAA AAATQPAALA ASGAGATAAG LTVSQHQQPV 300 KSYAAGATDP CSLQYNRELV NKQNESDNMQ DSDNLSMLTS MSTRNPGSLF PFSKQNNPFE 360 VTSSRPEFGL VSSDSLMSSP HSSLENVNLL SSQSLNENQS SASLQHFVDW PRTPAQGGLS 420 WPDAEDMQAQ RSQLSVSAPM ASSELSSAST SPIHEKLMLS PLKLSREYSP IGLSIAASRD 480 EVSQLEANWA TMFRDSSMGG PLGEVLTKNG NAEAKNCLSA PLNLLTDFWD SSPGMESSPV 540 GVLQKTTFGS VSSSTGSSPR MENHGAYDGI SNLRDDLGSI VVSHPNIRLL *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MELGGVVMDA GGGAAELGLL GGGSSRLLKH GRGNAAGEEH GWGGSGRAAK QARTTADVAE  60
AAKAAVAPFL LGSCSPGHGG EQMLSFSSAP ASSCASTAAV AAAAAAVAAD GAMPLYYGTP  120
ASCSGLSSVS LSSSMQGAMA RVRGPFTPSQ WIELEHQALI YKYLAANIPI PHSLLVPIRR  180
SLASSPYPPS YFGTSTLGWG SFQLGYSGNA DLEPGRCRRT DGKKWRCSRD AVADQKYCER  240
HMNRGRHRSR KHVEGQPGHA AKAMSAAVAA AAATQPAALA ASGAGATAAG LTVSQHQQPV  300
KSYAAGATDP CSLQYNRELV NKQNESDNMQ DSDNLSMLTS MSTRNPGSLF PFSKQNNPFE  360
VTSSRPEFGL VSSDSLMSSP HSSLENVNLL SSQSLNENQS SASLQHFVDW PRTPAQGGLS  420
WPDAEDMQAQ RSQLSVSAPM ASSELSSAST SPIHEKLMLS PLKLSREYSP IGLSIAASRD  480
EVSQLEANWA TMFRDSSMGG PLGEVLTKNG NAEAKNCLSA PLNLLTDFWD SSPGMESSPV  540
GVLQKTTFGS VSSSTGSSPR MENHGAYDGI SNLRDDLGSI VVSHPNIRLL *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G107700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981896.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	K4A7G6	0.0	K4A7G6_SETIT; Uncharacterized protein
STRING	Si034822m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-49	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Seita.9G107700.1.p
Entrez Gene	101785488

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]