PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G105300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TALE | ||||||||
Protein Properties | Length: 749aa MW: 78454.8 Da PI: 6.9244 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.6e-09 | 554 | 591 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Seita.9G105300.1.p 554 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 591 564459******************************88 PP | |||||||
2 | BELL | 120.4 | 8.1e-39 | 415 | 485 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia+q+ Seita.9G105300.1.p 415 RFEHQRKKAKLISMLDEVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIASQL 485 779******************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.6E-70 | 337 | 483 | IPR006563 | POX domain |
Pfam | PF07526 | 1.8E-53 | 342 | 482 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 532 | 595 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-9 | 535 | 599 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.21E-13 | 535 | 596 | No hit | No description |
SuperFamily | SSF46689 | 2.57E-17 | 537 | 602 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 538 | 601 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 552 | 591 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MGIAAPSSQP GQTTTYYVSQ PTKSSAAISG RPATASSSMS HSQGFHQGSS GVFGYSSDGF 60 DRPDSSQDHH QQQQQHVAQQ SRRDKLRVQG FDPPGAGAAG HGLLPIDGDE HAEPGAMFEH 120 AAAAGASNML SEMFNFPAPP SGPSATELLA SQMNATNYRF GLRQGVAGLS GDGGWFGAGA 180 AGRAGLVLGG ANMGSLGETS SPKQQGSMAG LATDPAAAMQ LFLMNPQQQQ QQQSRSSPTS 240 PQPSDVQHHE AFQAFGGGGA GGVVEGQGLS LSLSSSLQQL EMAKQAEELR VRDGVLYFNR 300 QQPQGPAVQQ QQLLPMALHG GQVGALGQQL HVGYGPAGVA GVLRNSKYTR AAQELLEEFC 360 SVGRGQIKGG ARGGRGASAS NPNASKAGGA SSSGAAQSPS SASKQEPPQL SPADRFEHQR 420 KKAKLISMLD EVDRRYNHYC DQMQMVVNFF DSVMGFGAAT PYTALAQKAM SRHFRCLKDA 480 IASQLRHTCE LLGEKDAGTS SGLTKGETPR LRAIDQSLRQ QRAFHHMGMM EQEAWRPQRG 540 LPERSVNILR SWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMIEEM 600 YQQECRELEG SSAGGGGPES GNDPSGADDT HSPTTTGAAQ LQQQQHGTAA PGLMPHKPDP 660 GAAGPSAADA AFVGIDPVEL LGGDAHVGGG ADDLYGRFEP GVRMRYGPGA TGAAAGDVSL 720 TLGLQHAGAG NAGPDGAGRF SLTDYSGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-17 | 541 | 598 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-17 | 541 | 598 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G105300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957501 | 0.0 | EU957501.1 Zea mays clone 1595427 homeodomain protein JUBEL1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981881.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 1e-139 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A368SF31 | 0.0 | A0A368SF31_SETIT; Uncharacterized protein | ||||
STRING | Si039082m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4433 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-126 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G105300.1.p |
Publications ? help Back to Top | |||
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