PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G098100.1.p
Common NameLOC101753373, SETIT_036039mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 395aa    MW: 42212.2 Da    PI: 10.5934
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G098100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31329387259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Seita.9G098100.1.p 329 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 387
                         69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.8E-17282326IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-34316388IPR003657WRKY domain
PROSITE profilePS5081129.757323389IPR003657WRKY domain
SuperFamilySSF1182908.76E-27326387IPR003657WRKY domain
SMARTSM007742.5E-38328388IPR003657WRKY domain
PfamPF031068.7E-27330386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEGMEEANRA AVESCHRVLA LLSNPRGQLV PNKDLVAATG EAVGKFGSLT AKLSNSNGNG  60
LQGHARVRKI KKPLPIFDSN LFLESSAVAV AAATPAKAPS ASPITGLQLF PRYQMEGSSS  120
KDPIRIHTQF PKRLMLENPA AALEGPSSQA PPVHMVQPVS VAPPAGTPTP ALPAAHLHFI  180
QQQQSYQRFQ LMQQMKIQNE MMKRSIGDQG GSLSGGGGGG AKGVNLKFDT SNCTASSSRS  240
FLSSLSMEGS LASLDGSRAN RPFQLVSGSQ ASSTPELGLV QRKRCTGRED GSGRCATGSR  300
CHCSKKRKLR IRRSIKVPAI SNKVADIPAD EFSWRKYGQK PIKGSPHPRG YYKCSSVRGC  360
PARKHVERCV DDPSMLIVTY EGDHNHNRVV AQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-203263871272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G098100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406800.0AY940680.1 Zea mays WRKY1 mRNA, complete cds.
GenBankBT0839930.0BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBankEU9561730.0EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981825.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLK4AAY20.0K4AAY2_SETIT; Uncharacterized protein
STRINGSi036039m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.16e-52WRKY DNA-binding protein 21