PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G095900.1.p
Common NameLOC105915063, SETIT_036148mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 382aa    MW: 41586.2 Da    PI: 4.642
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G095900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.9e-35591492101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw   gnsfvv+d + fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g++e
  Seita.9G095900.1.p  59 FLTKTYDVVDDPNTDTVVSWGFAGNSFVVWDANAFATVILPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRE 140
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++ikr++
  Seita.9G095900.1.p 141 LLKTIKRRR 149
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.62E-3455148IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3755148IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-5855148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-195982IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-3159148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-19110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDPFHGIVKE EEFDIELDFT GAPAGDAAAA AAAASSWAVG VPELPRPMEG LGEAGPTPFL  60
TKTYDVVDDP NTDTVVSWGF AGNSFVVWDA NAFATVILPR YFKHSNFSSF VRQLNTYGFR  120
KVDPDRWEFA NEGFLRGQRE LLKTIKRRRP PSSPSAQQGQ GQGQGQAQSP AVFLEVGQFG  180
LEGEVHRLQR DKGILLAEVV KLRQEQQATR AQMQAMEERI TTAEQKQQQM TVFLARAMKN  240
PDFLRMLVDR QGRRQRELED ALSKKRRRPI GYLPRGGDGI SSGAATEAAV GDYISGLPVG  300
VNGVAEPADD ESRPDHTGGG EDTESFWVEL LSLGLEEKRR EGGVEGSGAG ADVDNDVDDD  360
VDVLVQSIYH LNPNPGSPSG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-275014817129Heat shock factor protein 1
5d5v_B1e-275014817129Heat shock factor protein 1
5d5v_D1e-275014817129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G095900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0858161e-163BT085816.2 Zea mays full-length cDNA clone ZM_BFc0067H20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704129.10.0heat stress transcription factor A-2a
SwissprotQ84MN71e-151HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLK4AB910.0K4AB91_SETIT; Uncharacterized protein
STRINGSi036148m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-81heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]