PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G079700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 443aa MW: 45689.7 Da PI: 9.1272 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.6e-38 | 148 | 205 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Seita.9G079700.1.p 148 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 205 66789**************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.2E-31 | 150 | 204 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 151 | 205 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-27 | 151 | 202 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 153 | 189 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MACPFSSPSS NFFISHTPVP LPHPTTHPLI HTTKQEPESN HTTPPLPSPR KNPSPSASRS 60 LFELEFSPSI TMIQELLGGA AMDQLKSVND GNPASLPMLL HPTVSNPSPT SSSSTSSRSS 120 AQQPHQQQRS TSATSSPQGQ QQVQGAEQAP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT 180 CRRYWTKGGA LRNVPIGGGC RKPRPMPTPV AKPALSCKAV GGAPSLGLGV GLGMGAGPVP 240 WASSQQAAAA QLMALLNSAR GVQGGGGHGG SNMHRLLGLD SMAHLPIHVL PGAGNASGAP 300 ASLWPPAASR PIPTPPPHVD SQLGMGPLGQ HDVLSTLGLK LPSPSPSLAA SYYSDQLHAV 360 VSSAAGRPHE YDAPGTTSLP CTTAAASLPP PASSVSAALS SATVGLDLPP ISLPAPEMQY 420 WAGPAAMSMA WPDLPTPNGA FP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G079700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969749 | 0.0 | EU969749.1 Zea mays clone 335113 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981654.1 | 0.0 | dof zinc finger protein 4 | ||||
TrEMBL | A0A368SE80 | 0.0 | A0A368SE80_SETIT; Uncharacterized protein | ||||
STRING | Si039685m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7710 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07640.1 | 3e-31 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G079700.1.p |