PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G064600.1.p | ||||||||
Common Name | LOC101767058, SETIT_036075mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TCP | ||||||||
Protein Properties | Length: 392aa MW: 40076.1 Da PI: 9.6129 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116 | 4.9e-36 | 72 | 196 | 2 | 126 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasn 84 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai++l+ + + + a+ Seita.9G064600.1.p 72 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASDAIDKLPALdpaafaalP---------GPADADAAG 153 689*************************************************************333333331.........222222222 PP TCP 85 sssgkaaksaa.kskksqksaasalnlakesrakarararert 126 ++ +++++++ s+ s++s+ s l+l+++ ar re t Seita.9G064600.1.p 154 NKVKQQQQQHSgGSSTSETSKGSELSLSRSDGRGGAARDREVT 196 2222233333335666666666667777766667777777654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-34 | 73 | 201 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.77 | 74 | 132 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MEAVGDGGAA GAGDGAPGRS QQQGAKRGRG GGVRGSGSEA DAAAAAWGQP PALLPPPQGP 60 GAGSRIYRVR ASGGKDRHSK VYTAKGIRDR RVRLSVPTAI QFYDLQDRLG FDQPSKAIEW 120 LINAASDAID KLPALDPAAF AALPGPADAD AAGNKVKQQQ QQHSGGSSTS ETSKGSELSL 180 SRSDGRGGAA RDREVTVAST SAQAASFTEL LTGVASAGSI SAAEHKHSWQ QQQPNVSAAA 240 AADCVGIAHP GKGAHGLSTH AFSAPIKFGN APPFGMVPAQ PFNFTSSVEM PHFSLGQDAL 300 AASSASAGDY SLNFSMSSGF LGANRGTLQS NSQSNFSGYH HQQLQRLDGP FLFGHAAAAA 360 HPASENQLTA SAALQLWDGF RHSGMKEKSK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-26 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-26 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G064600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956595 | 0.0 | EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986203.1 | 0.0 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-113 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | K4AB18 | 0.0 | K4AB18_SETIT; Uncharacterized protein | ||||
STRING | Si036075m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-32 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G064600.1.p |
Entrez Gene | 101767058 |