PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G061700.1.p | ||||||||
Common Name | SETIT_039129mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19698.6 Da PI: 10.1624 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.8 | 1.5e-37 | 14 | 114 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk lrrkCa+dC+lapyfpa++p+++ +v+++FGasn+ ++l++lp +er +a+++++ eA++r++dPvyG++g++ +lq +++ ++ Seita.9G061700.1.p 14 RCAACKNLRRKCAQDCILAPYFPASDPQRYGCVQRVFGASNIARMLQSLPAHERGKAADTIAAEARWRVQDPVYGCAGIVGRLQGEIKAAQ 104 6****************************************************************************************** PP DUF260 92 aelallkeel 101 ela +++++ Seita.9G061700.1.p 105 CELAWTRAQI 114 ****999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.669 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-36 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSKSTEAGRS GSRRCAACKN LRRKCAQDCI LAPYFPASDP QRYGCVQRVF GASNIARMLQ 60 SLPAHERGKA ADTIAAEARW RVQDPVYGCA GIVGRLQGEI KAAQCELAWT RAQIAVHAAA 120 AARPRPAVDA RLSAPAQAAP PPQQQQQGDA LVMQLDPFQG LDALLIDDYR VARGRRSGLM 180 MR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 15 | 107 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 15 | 107 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G061700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661257.1 | 1e-100 | LOB domain-containing protein 24 | ||||
Swissprot | P59467 | 4e-39 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 4e-39 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | K4AJQ7 | 1e-127 | K4AJQ7_SETIT; Uncharacterized protein | ||||
STRING | Si039129m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 8e-39 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G061700.1.p |