PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G056400.2.p | ||||||||
Common Name | LOC101771457, SETIT_036486mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 340aa MW: 38256.6 Da PI: 5.4401 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.5 | 5.9e-35 | 38 | 129 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++++ ++sws+++nsf+v+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ Seita.9G056400.2.p 38 FLTKTYDMVDDPTTDAVVSWSATNNSFIVWDPHVFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRN 119 9********************999*****************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k Seita.9G056400.2.p 120 LLKNIRRRKP 129 *******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.1E-39 | 34 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.4E-61 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.31E-35 | 34 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.3E-31 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-20 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-20 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MNHGMLNSVK VESRPSEVTA NGQPRPMDGL HDGGPPPFLT KTYDMVDDPT TDAVVSWSAT 60 NNSFIVWDPH VFGTVLLPRY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQRNL 120 LKNIRRRKPP HSSPNQQSLG SYLEVGHFGY DEEIDQLKRD KQLLMAEVVK LRQEQQNTKS 180 DLQAMEEKLK DTEQKQQHMM AFMARVMQNP EFMHQLVSQH EMRKGLEDAI SKKRRRRIDQ 240 GPEADSMGNG SSLEQGSHAV FEPQEPVESL ANGVPSDLES SSVEAKGFEV QQGVSSGGSE 300 RLKGRPSGEL NDDFWEDLLH EGGLGAEAGN AVVQDDMNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-27 | 36 | 127 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 4e-27 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-27 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-27 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 236 | KKRRRR |
2 | 232 | 237 | KRRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G056400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041877 | 0.0 | BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds. | |||
GenBank | BT088410 | 0.0 | BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds. | |||
GenBank | EU956923 | 0.0 | EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds. | |||
GenBank | JX428494 | 0.0 | JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981438.2 | 0.0 | heat stress transcription factor A-2e | ||||
Swissprot | Q6F388 | 0.0 | HFA2E_ORYSJ; Heat stress transcription factor A-2e | ||||
TrEMBL | K4AC79 | 0.0 | K4AC79_SETIT; Uncharacterized protein | ||||
STRING | Si036493m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-105 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G056400.2.p |
Entrez Gene | 101771457 |
Publications ? help Back to Top | |||
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