PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G054400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 392aa    MW: 44281 Da    PI: 6.0889
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G054400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-1887133148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd  lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Seita.9G054400.1.p  87 KGQWTSEEDRELVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 133
                         799*****************************.*************97 PP
2Myb_DNA-binding52.51.1e-16141181345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Seita.9G054400.1.p 141 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 181
                         6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.44282137IPR017930Myb domain
SuperFamilySSF466895.87E-3184180IPR009057Homeodomain-like
SMARTSM007173.0E-1486135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2888141IPR009057Homeodomain-like
CDDcd001673.38E-1490133No hitNo description
PfamPF139214.0E-1890147No hitNo description
SMARTSM007172.5E-16138186IPR001005SANT/Myb domain
PROSITE profilePS5129419.544138188IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-21142186IPR009057Homeodomain-like
CDDcd001673.69E-13142184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVPPATFNDL GHHQYFAERE IKKPIFGHAS SIDHRVGFQL PMLTPKSEVS HLIESGLGSY  60
KAYEMSDRFV PRKKTSSYSL KKANIVKGQW TSEEDRELVK LVEQFGLRKW SYIAQMLPGR  120
VGKQCRERWH NHLRPNIKKD IWSDEEDMVL IQAHKEVGNK WAEIAKRLPG RTENSIKNHW  180
NATKRRQFAR RRSRSSSKGP RSSTLLQNYI KGLGIGPSKN AAPLAQHTLL PPPSPATPGA  240
KSATINEMLE HSPSDILDPQ GMLISAHEHS RCSETQSCEE LLAPVCYDDF SVVDMCDGLF  300
DTKEDAFQAV YAVDDDIDMN YIFNHLDHTI KVDPEISDME MMWDDDVLGC VEPAGSAEVE  360
TVHVKEEMDL MEMVAATQQN YGEAEKSQIS D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-44851882105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-44851882105C-Myb DNA-Binding Domain
1msf_C1e-44851882105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G054400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986186.30.0transcription factor MYB115
TrEMBLA0A368SDC20.0A0A368SDC2_SETIT; Uncharacterized protein
STRINGSi039046m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-61myb domain protein 98