PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G053700.1.p
Common NameSETIT_040171mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 403aa    MW: 42724.8 Da    PI: 9.4525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G053700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.1e-29329387259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++d  ++++tYe++Hnh 
  Seita.9G053700.1.p 329 ADNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDAGMLIVTYENDHNHA 387
                         69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.1E-13292326IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.5E-33316389IPR003657WRKY domain
PROSITE profilePS5081130.607323389IPR003657WRKY domain
SuperFamilySSF1182902.62E-26324389IPR003657WRKY domain
SMARTSM007749.7E-36328388IPR003657WRKY domain
PfamPF031061.8E-25330386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEVVEEANRA AVESCKKLVA FLSLSAGDPF RPMPVAVETD EAVAGFGKVV AVLSDRLGHA  60
RARVGKRSLA PPVDASCLLD HPSMAPRHPP NSSHLVSSTP AAAAPPPPTT AAMRSVAPLM  120
RSHEAEVAPA VMVSPCANVA LAPAPAAAAR KFDRNMFLET PLLELNSYSV LPSTAPMAAV  180
PKSTSTVVTV PSPNPCTTIS THIQFQPQQA KKQKSFQFDQ TPSGEQFHIE VPVPLPRGGG  240
GAKEVISFSF DNNSVCTSSA ATSFFTSISS QLISMSDAAT SSAATAKKAC AKRGEDGSVK  300
CHCPKKKKPR EKRVVRVPAI SDKNADIPAD NYSWRKYGQK PIKGSPHPRG YYRCSSKKDC  360
PARKHVERCR SDAGMLIVTY ENDHNHAQPL DPSVLTATAA EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193263891274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G053700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678752.10.0protein WRKY1
TrEMBLK4AMM70.0K4AMM7_SETIT; Uncharacterized protein
STRINGSi040171m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-36WRKY DNA-binding protein 7