PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G041300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 270aa    MW: 27884.4 Da    PI: 6.3742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G041300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-1175121354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h e+E+rRR+ri+s +++Lr++l  +     +K +Ka+ L kAve +++L
  Seita.9G041300.1.p  75 RNHREAEKRRRERIKSHLDRLRSVLSCD-----PKIDKASLLAKAVERVRDL 121
                         78***********************997.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.29172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1275128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-975121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1176125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-978127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MFPAAEVSAL AGAAGRQGEG GVVPMAMLPP FFMDSIWPAA AGGAGATGAT DSEEDEAAAA  60
AAAAAAHDRA LAASRNHREA EKRRRERIKS HLDRLRSVLS CDPKIDKASL LAKAVERVRD  120
LKQRVAGVGE AAPAHLFPTE HDEIVVLASG GAVFEASVCC DDRSDLLPEL IETLRALRLR  180
TLRAEMATLG GRVRNVLVLA RDVDGSGVTG DDDGYGGRTD SAGSVEGNAG GGGDFLKEAL  240
RALVERPGAG GGDRPKRRRV SGTNMQAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255259KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G041300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279660.0KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.10.0transcription factor bHLH106-like
TrEMBLA0A368SD610.0A0A368SD61_SETIT; Uncharacterized protein
STRINGPavir.J02699.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-26bHLH family protein