PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G033400.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 415aa MW: 42307.7 Da PI: 9.2504

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G033400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	118	178	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ Seita.9G033400.1.p 118 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 178 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-39	102	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	122	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	122	176	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MVFSSVPVYL DPPNWNQHQH QQQQQQAHHG QLPSGGGGVE THAHHHQQHQ HHQQHQHQHH 60 QLPPMPPPGA LMAPRPDMET IAVAASGGGG GGGGPTGGSA VRPGSMTERA RLAKIPQPEP 120 GLKCPRCEST NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRNKRTKSS 180 KSSSSSAAAS ASATGGGTSS STSSTATGGS SAAAAVMPPQ GQLPFLASLH HPLGGDHYST 240 GASRLGFPGL SSLDPVDYQL GGAGGGGGTA IGFEQWRLPQ IQQFPFLSRP DAVPPPMSGI 300 YPFDVEGHGD PAGFAGQMLG GSKVPGSAGL ITQLASVKME DNPPSTAMTS LPREFLGLPG 360 NLQFWGGGGN GGASGNNGGT ANTGGGGGGS GASAPGSSWV DLSGFNSSSS GNIL*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MVFSSVPVYL DPPNWNQHQH QQQQQQAHHG QLPSGGGGVE THAHHHQQHQ HHQQHQHQHH  60
QLPPMPPPGA LMAPRPDMET IAVAASGGGG GGGGPTGGSA VRPGSMTERA RLAKIPQPEP  120
GLKCPRCEST NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRNKRTKSS  180
KSSSSSAAAS ASATGGGTSS STSSTATGGS SAAAAVMPPQ GQLPFLASLH HPLGGDHYST  240
GASRLGFPGL SSLDPVDYQL GGAGGGGGTA IGFEQWRLPQ IQQFPFLSRP DAVPPPMSGI  300
YPFDVEGHGD PAGFAGQMLG GSKVPGSAGL ITQLASVKME DNPPSTAMTS LPREFLGLPG  360
NLQFWGGGGN GGASGNNGGT ANTGGGGGGS GASAPGSSWV DLSGFNSSSS GNIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G033400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981250.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A368SEE9	0.0	A0A368SEE9_SETIT; Uncharacterized protein
STRING	Si035896m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	5e-45	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Seita.9G033400.1.p