PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G005900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 525aa    MW: 56632.6 Da    PI: 4.6365
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G005900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35551462102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+++++++sw   +nsf+v+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Seita.9G005900.1.p  55 FLMKTYEMVDDPATDDVVSWGPGNNSFIVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 136
                         9*********************99*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Seita.9G005900.1.p 137 LLKTINRRKP 146
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-3948139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-6251144IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.05E-3551144IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-195578IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3155144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434094118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-19106118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MQGGVAAAAA AAAAAAAAAT VTTAVAPPVA PAPAASAHAA VGNGGGAANA PPPPFLMKTY  60
EMVDDPATDD VVSWGPGNNS FIVWNTPEFA RDLLPKYFKH SNFSSFVRQL NTYGFRKVDP  120
DRWEFANEGF LRGQKHLLKT INRRKPSLQG NSQPQQPQLQ NAPLPACVEV GKFGLEEEIE  180
RLKRDKNVLM QELVRLRQQQ QTTDHQLQTL GKRLQGMESR QQQMMSFLAK AMQSPGFLAQ  240
FVQQNENSRR RIVAVNKKRR LPKQDGGLDS ESASASLDGQ IIKYQPMINE AAKAMLRKIL  300
KLDASHRLES VGNSDNFLLE NYMPAAQGFD SSSSTRNSGV TLAEVPATSG LPYVAASSGL  360
SAICSSSVAP EIQCPAVLDS NSSNQVPNMT VVPPVSKPIA PAPGDLTIPE FPDLADIVPE  420
DSDIPGGPFG MPGPEFPLPE EGDDSVPIET DEILYNDETQ DLPAIVDSFW EQFLVGSPLS  480
VDTDEVDSGV LDSRETPQEN GWNKLEHMAN LTEQMGLLSP NHRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-254514419129Heat shock factor protein 1
5d5v_B1e-254514419129Heat shock factor protein 1
5d5v_D1e-254514419129Heat shock factor protein 1
5hdg_A8e-26531448110Heat shock factor protein 1
5hdn_A8e-26531448110Heat shock factor protein 1
5hdn_B8e-26531448110Heat shock factor protein 1
5hdn_C8e-26531448110Heat shock factor protein 1
5hdn_D8e-26531448110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G005900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847250.0KF184725.1 Saccharum hybrid cultivar R570 clone BAC 133K20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980999.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A368SBY60.0A0A368SBY6_SETIT; Uncharacterized protein
STRINGSi035526m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-116heat shock transcription factor A1D
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]