PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G005600.1.p | ||||||||
Common Name | SETIT_038727mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 379aa MW: 41090.1 Da PI: 6.9801 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.5 | 1.8e-25 | 177 | 241 | 2 | 59 |
--SS-EEEEEEE--TT-SS-E......EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefpr......sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr +YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ Seita.9G005600.1.p 177 SDLWAWRKYGQKPIKGSPYPRymrytrGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 241 699***************9954444448*****998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 29.459 | 171 | 243 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-28 | 174 | 243 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-23 | 175 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-34 | 176 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-21 | 178 | 241 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDMEAPVVAG TAQGDLADVV ARAGAIMAAA PPSTSHPRRP PPPSSLAAAD HMSSSAAAMA 60 AGQIMVPSYD EEPRPACSDA VMFDPYLPSS PATAPPRGGH WLPPQHQLAL QISQHACYAR 120 DVAMAGAATD VDGDEAMRIS PAAHQIMKRK NEVKRVVCIP ALPPTSSRPG GGEVIPSDLW 180 AWRKYGQKPI KGSPYPRYMR YTRGYYRCSS SKGCMARKQV ERSRSDPNML VITYTAEHNH 240 PWPMQRNVLA GYSRPHTHTS TNCKKKNSYR DVGPITPSPS PPSKNNANYY SEHNAVSSGN 300 NLECQQTTDM MEANAAGYVA YTIGALDDDE DVAMHQPMSC NSIQTADEVF AELEELEPSN 360 PASANIYSRG VSYEWHKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-21 | 150 | 243 | 2 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-21 | 150 | 243 | 2 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G005600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980994.1 | 0.0 | probable WRKY transcription factor 14 | ||||
TrEMBL | A0A368SBQ4 | 0.0 | A0A368SBQ4_SETIT; Uncharacterized protein | ||||
STRING | Si038727m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13466 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-50 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G005600.1.p |