PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G237900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23567.7 Da PI: 8.2822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.5 | 2.1e-15 | 55 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g+ GVr ++ +g ++AeIrd + +g +r++lg+f+t+e Aa a+++a+ + +g Seita.8G237900.1.p 55 GFIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 105 789***999.**********43343..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-20 | 55 | 114 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.8E-11 | 55 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.824 | 55 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-27 | 55 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 56 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 56 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDAAAVAKEC SDGLSSTSSS STMAGMVWPT TWDQQQQPPD AGASPSPGET EKREGFIGVR 60 PRPWGTFAAE IRDSTRRGAR VWLGTFDTPE AAALAYDQAA FSARGAAAVL NFPVDRVRES 120 LAPLALAAGV GGGSPVLALK RRHSKRRTRR RRKGLCSKCM ADGKDLQPPC QCSDVSATAM 180 AVPQQQVTAA RCQVRFGVLE LEDLGADYLD ELLRISCELA A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-23 | 56 | 113 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G237900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979997.1 | 1e-159 | ethylene-responsive transcription factor ERF094 | ||||
TrEMBL | A0A368SCQ3 | 1e-158 | A0A368SCQ3_SETIT; Uncharacterized protein | ||||
STRING | Si028219m | 1e-138 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP32289 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-28 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G237900.1.p |