PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G180600.1.p

Common Name

LOC101759966, SETIT_026752mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 270aa MW: 29043.1 Da PI: 5.5312

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G180600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9e-05	37	86	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + +++L Seita.8G180600.1.p 37 KKTHKAEREKLKRDQLNELFLELGSMLDLD----RQNTGKATVLGDAARVLRDL 86 678899********************9886....56677888888887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-11	34	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-8	34	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.79E-4	34	91	No hit	No description
PROSITE profile	PS50888	11.033	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-4	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVADTESSDL LPGSSNAAAE TPVHGSLDQR SQEKTPKKTH KAEREKLKRD QLNELFLELG 60 SMLDLDRQNT GKATVLGDAA RVLRDLVTQV ESLRKEQSAL LSEQQYVSSE KNELQEENTT 120 LKSQISELAN DLCARMGSSS LSLSSPGMSH PVANATSPDL ATHPMPHHMW GNIPNLSSVA 180 MAHQTTTVSP VHSQHHSAND VEVYAPPPQE LQLFPGTSSS PEHECSGIRS AATNSSSLTD 240 SLPGQLCLSL TQSSQEESSS GVLGRRKER*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G180600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979635.1	0.0	transcription factor BHLH062
TrEMBL	K3ZJJ9	0.0	K3ZJJ9_SETIT; Uncharacterized protein
STRING	Si026752m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	9e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.8G180600.1.p
Entrez Gene	101759966