PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G175800.1.p | ||||||||
Common Name | SETIT_027437mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 301aa MW: 31368.1 Da PI: 9.3503 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.2 | 5.5e-36 | 40 | 99 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ l+cprC+stntkfCyynn s++qPryfCkaCrr Wt+GG+lrnvPvGgg+rknkk+ Seita.8G175800.1.p 40 QEQGLNCPRCNSTNTKFCYYNNNSMTQPRYFCKACRRNWTQGGTLRNVPVGGGSRKNKKN 99 68899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 37 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-32 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.577 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MVASPSREEA AAARNIKAKQ ERQQQVVASG ADERKPRPQQ EQGLNCPRCN STNTKFCYYN 60 NNSMTQPRYF CKACRRNWTQ GGTLRNVPVG GGSRKNKKNR AGGSSSSSSA PPAPSSSCTN 120 SKKMNLTQQL LMMPTAMAPM PADFPNVLPT FMSAGGEGFE LPGSDHHSVP FPPLSLPSNP 180 GTMPSLLNML TGGFLDGGMG AQPFLPAPPS FGARQHEHAI ICGSSDQQVV GPLQGVDKAL 240 KPPMAAAGGS GLQQWPSSAA QELQVVGGDG SAFNNNNGNN NGGGASGGIS GVEHYWHGST 300 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G175800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980691.1 | 0.0 | dof zinc finger protein PBF | ||||
TrEMBL | K3ZLH8 | 0.0 | K3ZLH8_SETIT; Uncharacterized protein | ||||
STRING | Si027437m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-35 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G175800.1.p |