PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G175700.1.p

Common Name

SETIT_027519mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 263aa MW: 27625.1 Da PI: 9.8855

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G175700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.5	4.6e-36	40	99	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ l+cprC+stntkfCyynn s++qPryfCkaCrr Wt+GG+lrn+PvGgg+rknk++ Seita.8G175700.1.p 40 QEQGLNCPRCNSTNTKFCYYNNNSMTQPRYFCKACRRNWTQGGTLRNIPVGGGSRKNKQN 99 68899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	37	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.428	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVASPPREEA DPARNVKAKQ AQQQQVAASG ASERKPRPQQ EQGLNCPRCN STNTKFCYYN 60 NNSMTQPRYF CKACRRNWTQ GGTLRNIPVG GGSRKNKQNR AGSSSSSSPA PPAPSSSSTN 120 SKKMNLTQQL LMMPTAMAPM PADFPIVLPT FMSTGGGGFE LPSSDHHSLP FPPLSLPSNP 180 GTTPSLLDML TGGFLDGGIG ALPFLPTPPS FGAMQHGHGI MVGSHDQQLG VDQALKPPMA 240 ATGGSGLQQW PSSAAQDQHG SI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G175700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980691.1	1e-149	dof zinc finger protein PBF
Swissprot	O24463	4e-48	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A368S937	0.0	A0A368S937_SETIT; Uncharacterized protein
STRING	Si027519m	1e-166	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Seita.8G175700.1.p

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]