PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G160000.5.p | ||||||||
Common Name | SETIT_025839mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 1153aa MW: 127775 Da PI: 9.4374 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ W++Ia + Rt ++ Seita.8G160000.5.p 46 QWSKDELERFYSAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6*****************99.********9.9998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-10 | 42 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-6 | 46 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 46 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.017 | 47 | 86 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.43E-5 | 47 | 89 | No hit | No description |
Pfam | PF06584 | 9.7E-33 | 619 | 719 | IPR033471 | DIRP domain |
SMART | SM01135 | 2.2E-56 | 619 | 720 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1153 aa Download sequence Send to blast |
MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGGN 180 RPRAVGKRTP RVPVASMYHR DERGAPHRQA KPDSNNGDDE GAHVAALALA EVYQRGGSPQ 240 VSQTPGRSGD RMFLSPIKSS DRKNADSEMG SSKLHGFQLD ADYPEASLGS REAETGDYTK 300 GASYLMTNKG SPSGKPQKKV KRSQKRRKKA VRKTGDQFEY DREACSGTEE GHSARKAKEE 360 PELEALGRKT AWPSSTSNKR SRQLFFDDDI SALDALHTLA DLSVNILQPS SVVESESSAQ 420 IKDENKDNDS DGKPSIPAAV SVYEQKDYSK SMAKKLKRQS EIASTDMVTR KKAKLAKDPH 480 HDGSTTSEVK QQACTCGVKT EKKKRKSSTG KVSKDEKNIL KDVEKTEVSA EEGKVSSNKE 540 TTARGATPPQ ADLTSKVKSR RKGGIQKSLT QECKPTEGAD DSGSDKLSYS LSNIIDVKDK 600 LSHCLSSRLL RRWCMFEWFY SAIDYPWFAK SEFVEYLNHV KLGHVPRLTR VEWGVIRSSL 660 GKPRRLSKQF LCEEREKLSQ YRDSVRQHYA ELRSGIREGL PTDLARPLAV GQRVIACHPR 720 TRELHDGNVL TVDDNRCRVQ FDRPELGVEF VMDIDCMPLH PPENFPESLR QQNIVNEYYS 780 RLSEANEDQM KELGNGGGAR FTSNLNGADA TFHIPPGHPI STLMKQAKGD SIDSIAQAKA 840 TVNEVTVATQ QAIYNQPSTL SQIQEREADI RALAELSRAL DKKEALLVEL RHMNEEVSGK 900 QRDGEIIRDL EHFRKQYAMV LVQLRDSNDQ VAGALLSLRQ RNTYHGNPVQ SYPKSMENGI 960 AFAGAPDPYN LFGYINPESG SQVIEVIETS KCRAKMMVDV AIQAMCKVSE GENPFAKIGE 1020 ALDNFNSRGT GSGSSILGIR RIPPDSGQSN ASYQENGTPA PATNNSSRLP NGGNSDGQFP 1080 NELISSCVAM MLMIKNCTEK QYHPAEVAHI LDSALSGLQP CSSQNIPIFR EIEMCMGIIK 1140 NQMLALIPTA SG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 332 | QKKVKRSQKRRKKAVRK |
2 | 319 | 325 | VKRSQKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G160000.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703940.1 | 0.0 | protein ALWAYS EARLY 2 isoform X2 | ||||
TrEMBL | A0A368S889 | 0.0 | A0A368S889_SETIT; Uncharacterized protein | ||||
STRING | Si025839m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G160000.5.p |