PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G160000.3.p

Common Name

SETIT_025839mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 1148aa MW: 127362 Da PI: 9.4781

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G160000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.4e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ W++Ia + Rt ++ Seita.8G160000.3.p 46 QWSKDELERFYSAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6***************99.******9.9998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.86E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-4	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-6	46	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-5	46	85	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.017	47	86	IPR017877	Myb-like domain
CDD	cd00167	1.42E-5	47	89	No hit	No description
SMART	SM01135	2.2E-56	623	724	IPR033471	DIRP domain
Pfam	PF06584	9.7E-33	623	723	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1148 aa Download sequence Send to blast
MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGDL 180 FVGNRPRAVG KRTPRVPVAS MYHRDERGAP HRQAKPDSNN GDDEGAHVAA LALAEVYQRG 240 GSPQVSQTPG RSGDRMFLSP IKSSDRKNAD SEMGSSKLHG FQLDADYPEA SLGSREAETG 300 DYTKGASYLM TNKGSPSGKP QKKVKRSQKR RKKAVRKTGD QFEYDREACS GTEEGHSARK 360 AKEEPELEAL GRKTAWPSST SNKRSRQLFF DDDISALDAL HTLADLSVNI LQPSSVVESE 420 SSAQIKDENK DNDSDGKPSI PAAVSVYEQK DYSKSMAKKL KRQSEIASTD MVTRKKAKLA 480 KDPHHDGSTT SEVKQQACTC GVKTEKKKRK SSTGKVSKDE KNILKDVEKT EVSAEEGKVS 540 SNKETTARGA TPPQADLTSK VKSRRKGGIQ KSLTQECKPT EGADDSGSDK LSYSLSNIID 600 VKDKLSHCLS SRLLRRWCMF EWFYSAIDYP WFAKSEFVEY LNHVKLGHVP RLTRVEWGVI 660 RSSLGKPRRL SKQFLCEERE KLSQYRDSVR QHYAELRSGI REGLPTDLAR PLAVGQRVIA 720 CHPRTRELHD GNVLTVDDNR CRVQFDRPEL GVEFVMDIDC MPLHPPENFP ESLRQQNIVN 780 EYYSRLSEAN EDQMKELGNG GGARFTSNLN GADATFHIPP GHPISTLMKQ AKAKATVNEV 840 TVATQQAIYN QPSTLSQIQE READIRALAE LSRALDKKEA LLVELRHMNE EVSGKQRDGE 900 IIRDLEHFRK QYAMVLVQLR DSNDQVAGAL LSLRQRNTYH GNPVQSYPKS MENGIAFAGA 960 PDPYNLFGYI NPESGSQVIE VIETSKCRAK MMVDVAIQAM CKVSEGENPF AKIGEALDNF 1020 NSRGTGSGSS ILGIRRIPPD SGQSNASYQE NGTPAPATNN SSRLPNGGNS DGQFPNELIS 1080 SCVAMMLMIK NCTEKQYHPA EVAHILDSAL SGLQPCSSQN IPIFREIEMC MGIIKNQMLA 1140 LIPTASG*

Sequence ? help Back to Top

Protein Sequence Length: 1148 aa Download sequence Send to blast

MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR  60
KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGDL  180
FVGNRPRAVG KRTPRVPVAS MYHRDERGAP HRQAKPDSNN GDDEGAHVAA LALAEVYQRG  240
GSPQVSQTPG RSGDRMFLSP IKSSDRKNAD SEMGSSKLHG FQLDADYPEA SLGSREAETG  300
DYTKGASYLM TNKGSPSGKP QKKVKRSQKR RKKAVRKTGD QFEYDREACS GTEEGHSARK  360
AKEEPELEAL GRKTAWPSST SNKRSRQLFF DDDISALDAL HTLADLSVNI LQPSSVVESE  420
SSAQIKDENK DNDSDGKPSI PAAVSVYEQK DYSKSMAKKL KRQSEIASTD MVTRKKAKLA  480
KDPHHDGSTT SEVKQQACTC GVKTEKKKRK SSTGKVSKDE KNILKDVEKT EVSAEEGKVS  540
SNKETTARGA TPPQADLTSK VKSRRKGGIQ KSLTQECKPT EGADDSGSDK LSYSLSNIID  600
VKDKLSHCLS SRLLRRWCMF EWFYSAIDYP WFAKSEFVEY LNHVKLGHVP RLTRVEWGVI  660
RSSLGKPRRL SKQFLCEERE KLSQYRDSVR QHYAELRSGI REGLPTDLAR PLAVGQRVIA  720
CHPRTRELHD GNVLTVDDNR CRVQFDRPEL GVEFVMDIDC MPLHPPENFP ESLRQQNIVN  780
EYYSRLSEAN EDQMKELGNG GGARFTSNLN GADATFHIPP GHPISTLMKQ AKAKATVNEV  840
TVATQQAIYN QPSTLSQIQE READIRALAE LSRALDKKEA LLVELRHMNE EVSGKQRDGE  900
IIRDLEHFRK QYAMVLVQLR DSNDQVAGAL LSLRQRNTYH GNPVQSYPKS MENGIAFAGA  960
PDPYNLFGYI NPESGSQVIE VIETSKCRAK MMVDVAIQAM CKVSEGENPF AKIGEALDNF  1020
NSRGTGSGSS ILGIRRIPPD SGQSNASYQE NGTPAPATNN SSRLPNGGNS DGQFPNELIS  1080
SCVAMMLMIK NCTEKQYHPA EVAHILDSAL SGLQPCSSQN IPIFREIEMC MGIIKNQMLA  1140
LIPTASG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	336	QKKVKRSQKRRKKAVRK
2	323	329	VKRSQKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G160000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038905	0.0	BT038905.1 Zea mays full-length cDNA clone ZM_BFb0339F13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703938.1	0.0	protein ALWAYS EARLY 2 isoform X1
TrEMBL	K3ZGY7	0.0	K3ZGY7_SETIT; Uncharacterized protein
STRING	Si025839m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Seita.8G160000.3.p