PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G160000.2.p

Common Name

SETIT_025839mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 1144aa MW: 126888 Da PI: 9.5169

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G160000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.4e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ W++Ia + Rt ++ Seita.8G160000.2.p 46 QWSKDELERFYSAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6***************99.******9.9998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.86E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-5	46	85	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-6	46	86	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.017	47	86	IPR017877	Myb-like domain
CDD	cd00167	1.41E-5	47	89	No hit	No description
SMART	SM01135	2.2E-56	619	720	IPR033471	DIRP domain
Pfam	PF06584	9.6E-33	619	719	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1144 aa Download sequence Send to blast
MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGGN 180 RPRAVGKRTP RVPVASMYHR DERGAPHRQA KPDSNNGDDE GAHVAALALA EVYQRGGSPQ 240 VSQTPGRSGD RMFLSPIKSS DRKNADSEMG SSKLHGFQLD ADYPEASLGS REAETGDYTK 300 GASYLMTNKG SPSGKPQKKV KRSQKRRKKA VRKTGDQFEY DREACSGTEE GHSARKAKEE 360 PELEALGRKT AWPSSTSNKR SRQLFFDDDI SALDALHTLA DLSVNILQPS SVVESESSAQ 420 IKDENKDNDS DGKPSIPAAV SVYEQKDYSK SMAKKLKRQS EIASTDMVTR KKAKLAKDPH 480 HDGSTTSEVK QQACTCGVKT EKKKRKSSTG KVSKDEKNIL KDVEKTEVSA EEGKVSSNKE 540 TTARGATPPQ ADLTSKVKSR RKGGIQKSLT QECKPTEGAD DSGSDKLSYS LSNIIDVKDK 600 LSHCLSSRLL RRWCMFEWFY SAIDYPWFAK SEFVEYLNHV KLGHVPRLTR VEWGVIRSSL 660 GKPRRLSKQF LCEEREKLSQ YRDSVRQHYA ELRSGIREGL PTDLARPLAV GQRVIACHPR 720 TRELHDGNVL TVDDNRCRVQ FDRPELGVEF VMDIDCMPLH PPENFPESLR QQNIVNEYYS 780 RLSEANEDQM KELGNGGGAR FTSNLNGADA TFHIPPGHPI STLMKQAKAK ATVNEVTVAT 840 QQAIYNQPST LSQIQEREAD IRALAELSRA LDKKEALLVE LRHMNEEVSG KQRDGEIIRD 900 LEHFRKQYAM VLVQLRDSND QVAGALLSLR QRNTYHGNPV QSYPKSMENG IAFAGAPDPY 960 NLFGYINPES GSQVIEVIET SKCRAKMMVD VAIQAMCKVS EGENPFAKIG EALDNFNSRG 1020 TGSGSSILGI RRIPPDSGQS NASYQENGTP APATNNSSRL PNGGNSDGQF PNELISSCVA 1080 MMLMIKNCTE KQYHPAEVAH ILDSALSGLQ PCSSQNIPIF REIEMCMGII KNQMLALIPT 1140 ASG*

Sequence ? help Back to Top

Protein Sequence Length: 1144 aa Download sequence Send to blast

MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR  60
KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGGN  180
RPRAVGKRTP RVPVASMYHR DERGAPHRQA KPDSNNGDDE GAHVAALALA EVYQRGGSPQ  240
VSQTPGRSGD RMFLSPIKSS DRKNADSEMG SSKLHGFQLD ADYPEASLGS REAETGDYTK  300
GASYLMTNKG SPSGKPQKKV KRSQKRRKKA VRKTGDQFEY DREACSGTEE GHSARKAKEE  360
PELEALGRKT AWPSSTSNKR SRQLFFDDDI SALDALHTLA DLSVNILQPS SVVESESSAQ  420
IKDENKDNDS DGKPSIPAAV SVYEQKDYSK SMAKKLKRQS EIASTDMVTR KKAKLAKDPH  480
HDGSTTSEVK QQACTCGVKT EKKKRKSSTG KVSKDEKNIL KDVEKTEVSA EEGKVSSNKE  540
TTARGATPPQ ADLTSKVKSR RKGGIQKSLT QECKPTEGAD DSGSDKLSYS LSNIIDVKDK  600
LSHCLSSRLL RRWCMFEWFY SAIDYPWFAK SEFVEYLNHV KLGHVPRLTR VEWGVIRSSL  660
GKPRRLSKQF LCEEREKLSQ YRDSVRQHYA ELRSGIREGL PTDLARPLAV GQRVIACHPR  720
TRELHDGNVL TVDDNRCRVQ FDRPELGVEF VMDIDCMPLH PPENFPESLR QQNIVNEYYS  780
RLSEANEDQM KELGNGGGAR FTSNLNGADA TFHIPPGHPI STLMKQAKAK ATVNEVTVAT  840
QQAIYNQPST LSQIQEREAD IRALAELSRA LDKKEALLVE LRHMNEEVSG KQRDGEIIRD  900
LEHFRKQYAM VLVQLRDSND QVAGALLSLR QRNTYHGNPV QSYPKSMENG IAFAGAPDPY  960
NLFGYINPES GSQVIEVIET SKCRAKMMVD VAIQAMCKVS EGENPFAKIG EALDNFNSRG  1020
TGSGSSILGI RRIPPDSGQS NASYQENGTP APATNNSSRL PNGGNSDGQF PNELISSCVA  1080
MMLMIKNCTE KQYHPAEVAH ILDSALSGLQ PCSSQNIPIF REIEMCMGII KNQMLALIPT  1140
ASG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	332	QKKVKRSQKRRKKAVRK
2	319	325	VKRSQKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G160000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703940.1	0.0	protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A368S8F5	0.0	A0A368S8F5_SETIT; Uncharacterized protein
STRING	Si025839m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Seita.8G160000.2.p