PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G160000.1.p | ||||||||
Common Name | SETIT_025839mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 1157aa MW: 128249 Da PI: 9.3947 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ W++Ia + Rt ++ Seita.8G160000.1.p 46 QWSKDELERFYSAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6*****************99.********9.9998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-10 | 42 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-6 | 46 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 46 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.017 | 47 | 86 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.43E-5 | 47 | 89 | No hit | No description |
SMART | SM01135 | 2.2E-56 | 623 | 724 | IPR033471 | DIRP domain |
Pfam | PF06584 | 9.8E-33 | 623 | 723 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1157 aa Download sequence Send to blast |
MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGDL 180 FVGNRPRAVG KRTPRVPVAS MYHRDERGAP HRQAKPDSNN GDDEGAHVAA LALAEVYQRG 240 GSPQVSQTPG RSGDRMFLSP IKSSDRKNAD SEMGSSKLHG FQLDADYPEA SLGSREAETG 300 DYTKGASYLM TNKGSPSGKP QKKVKRSQKR RKKAVRKTGD QFEYDREACS GTEEGHSARK 360 AKEEPELEAL GRKTAWPSST SNKRSRQLFF DDDISALDAL HTLADLSVNI LQPSSVVESE 420 SSAQIKDENK DNDSDGKPSI PAAVSVYEQK DYSKSMAKKL KRQSEIASTD MVTRKKAKLA 480 KDPHHDGSTT SEVKQQACTC GVKTEKKKRK SSTGKVSKDE KNILKDVEKT EVSAEEGKVS 540 SNKETTARGA TPPQADLTSK VKSRRKGGIQ KSLTQECKPT EGADDSGSDK LSYSLSNIID 600 VKDKLSHCLS SRLLRRWCMF EWFYSAIDYP WFAKSEFVEY LNHVKLGHVP RLTRVEWGVI 660 RSSLGKPRRL SKQFLCEERE KLSQYRDSVR QHYAELRSGI REGLPTDLAR PLAVGQRVIA 720 CHPRTRELHD GNVLTVDDNR CRVQFDRPEL GVEFVMDIDC MPLHPPENFP ESLRQQNIVN 780 EYYSRLSEAN EDQMKELGNG GGARFTSNLN GADATFHIPP GHPISTLMKQ AKGDSIDSIA 840 QAKATVNEVT VATQQAIYNQ PSTLSQIQER EADIRALAEL SRALDKKEAL LVELRHMNEE 900 VSGKQRDGEI IRDLEHFRKQ YAMVLVQLRD SNDQVAGALL SLRQRNTYHG NPVQSYPKSM 960 ENGIAFAGAP DPYNLFGYIN PESGSQVIEV IETSKCRAKM MVDVAIQAMC KVSEGENPFA 1020 KIGEALDNFN SRGTGSGSSI LGIRRIPPDS GQSNASYQEN GTPAPATNNS SRLPNGGNSD 1080 GQFPNELISS CVAMMLMIKN CTEKQYHPAE VAHILDSALS GLQPCSSQNI PIFREIEMCM 1140 GIIKNQMLAL IPTASG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 336 | QKKVKRSQKRRKKAVRK |
2 | 323 | 329 | VKRSQKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G160000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038905 | 0.0 | BT038905.1 Zea mays full-length cDNA clone ZM_BFb0339F13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703938.1 | 0.0 | protein ALWAYS EARLY 2 isoform X1 | ||||
TrEMBL | A0A368S8A8 | 0.0 | A0A368S8A8_SETIT; Uncharacterized protein | ||||
STRING | Si025839m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6230 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G160000.1.p |