PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G149900.1.p | ||||||||
Common Name | SETIT_027897mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 164aa MW: 19642.3 Da PI: 9.5549 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.8 | 2.7e-16 | 30 | 116 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+n++A++ GFs r + ++++ + ++r++vCskeg +++ + ++ +rr+r++tr +C +++++ + + w+v+k HnH++ Seita.8G149900.1.p 30 EFFNAFARNKGFSGRGRLHTQQ----TKMSRQYVCSKEGAGQPKFLNrETMKRRPRPVTRFDCPFEVVMRHKPeMNIWYVHKYLYTHNHNF 116 6**************9988777....4589***********9997775688999****************999899*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-14 | 30 | 116 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MPAHTQTLEE LEEYEYIVER TFHSEDEGYE FFNAFARNKG FSGRGRLHTQ QTKMSRQYVC 60 SKEGAGQPKF LNRETMKRRP RPVTRFDCPF EVVMRHKPEM NIWYVHKYLY THNHNFRASE 120 KRNILAYQTA GLRKYQIMDV MEKQYGGPHN VGYVIKDLYN FHF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G149900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K3ZMS7 | 1e-120 | K3ZMS7_SETIT; Uncharacterized protein | ||||
STRING | Si027897m | 1e-121 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-12 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G149900.1.p |