PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G135700.3.p | ||||||||
Common Name | LOC101781693, SETIT_025988mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 811aa MW: 89905.2 Da PI: 7.052 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.4e-23 | 111 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F Seita.8G135700.3.p 111 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL-- 198 99*****************************7333.34459************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + ++el+v+v+r+ Seita.8G135700.3.p 199 RGVNGELRVGVRRA 212 4489999****996 PP | |||||||
2 | Auxin_resp | 105.8 | 5.1e-35 | 237 | 319 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++ +GmRfkm+fe+e+++e+r++Gt+vg d d+ Wp+SkWr Lk Seita.8G135700.3.p 237 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPDQAGWPESKWRYLK 319 89******************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.8E-42 | 103 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-40 | 104 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.67E-21 | 109 | 211 | No hit | No description |
PROSITE profile | PS50863 | 11.519 | 111 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-23 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-21 | 111 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-32 | 237 | 319 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.208 | 685 | 767 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.89E-11 | 686 | 761 | No hit | No description |
Pfam | PF02309 | 7.6E-8 | 726 | 770 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MYTELWNLCA GPLVTVPSVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM 60 NVELKAEPDT DEVYAQLTLL PESKPDENGS SEQEMPAAPS AAPARPRVHS FCKTLTASDT 120 STHGGFSVLR RHADECLPPL DMSRQPPTQE LVAKDLHGAE WRFRHIFRGQ PRRHLLQSGW 180 SVFVSAKRLV AGDAFIFLRG VNGELRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA 240 VNTGTMFTVY YKPRTSPAEF VVPCDRYMES LKRNYPIGMR FKMRFEGEEA PEQRFTGTIV 300 GNVDPDQAGW PESKWRYLKV RWDEASSIPR PERVSPWQIE PAVSPPPINP LPVHRPKRPR 360 SNAVASLPDS SAPTKEAAPK VTVEAQQNAL QRVLQTQDNA TPKSAFGDKS ELDAAQQSVL 420 RPSGFDREKS TIGTQRKLGS DSWMQMSRPE SYNEMLSGLS GYQQPKDLQN QQGFCSLPDQ 480 IAAGRPNFWH TVNAHYQDQQ GNHNMFGSWS MMPSSTGFGL NRQNYPMIQE VGAMPQSSAN 540 TKFGNGVYTP LPGRGIDQYS AGWFGHMVPG SRMDDAQPRV IKPQPLVLAH GDAQKMKGNS 600 CKLFGIHLDS PAKSEPLKSP PSVANDGMPQ TPAAAEWRRV DTTEVEKSSD PPKTPKQLDA 660 PQADPVPCPQ SSRSTQCKSQ GGSTRSCKKV HKQGIALGRS VDLTKFKGYT ELVSELDEMF 720 DFNGELKGSN KEWMVVYTDN EGDMMLVGDD PWDEFCNMVH KIFIYTTEEV QRMNPGTLNS 780 GSEDSPANSM ERGSAVRETL PASSLNSGNC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-170 | 4 | 341 | 22 | 354 | Auxin response factor 1 |
4ldw_A | 1e-170 | 4 | 341 | 22 | 354 | Auxin response factor 1 |
4ldw_B | 1e-170 | 4 | 341 | 22 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G135700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684734.1 | 0.0 | auxin response factor 23 isoform X2 | ||||
Swissprot | A2ZET6 | 0.0 | ARFW_ORYSI; Auxin response factor 23 | ||||
TrEMBL | K3ZHD7 | 0.0 | K3ZHD7_SETIT; Auxin response factor | ||||
STRING | Si025988m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G135700.3.p |
Entrez Gene | 101781693 |