PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G124900.1.p
Common NameLOC101757398, SETIT_026656mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 318aa    MW: 33562.3 Da    PI: 8.845
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G124900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4178154278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+k+sCr+rL++hn+rrrk+q+
  Seita.8G124900.1.p  78 CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKKSCRKRLDGHNRRRRKPQH 154
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3371139IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.27475152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-3977157IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3078151IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDWAAASGAP SWGAAAASDP GPTMLSFAGP SSSAAAAAAE ARLQDFAAGL AQRARPVGAA  60
GGGRRSRSAG GGGGAEACSV DGCRSDLSRC REYHRRHRVC EAHSKTPVVV VGGQEQRFCQ  120
QCSRFHMLSE FDEGKKSCRK RLDGHNRRRR KPQHDLTNLG GFIPYHQVNQ FEIYPQTTPT  180
VRENSDTMHL VHRQPPFSIS FSRTPKQLPF PQDGGGMLSA SHHGHFLVED SNHTGSSACN  240
NTLGPKCALS PLSSSLHHPS PAGQAQVASA LSRIASASQQ VATAAVTAAF ASGGSHHVFV  300
PDAVLEDPSQ ALPFPWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2769151284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134151KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G124900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979310.10.0putative squamosa promoter-binding-like protein 19
RefseqXP_004979311.10.0putative squamosa promoter-binding-like protein 19
RefseqXP_012703492.10.0putative squamosa promoter-binding-like protein 19
RefseqXP_022684594.10.0putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y16e-93SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLK3ZJA30.0K3ZJA3_SETIT; Uncharacterized protein
STRINGSi026656m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-40SBP family protein