PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G098800.1.p

Common Name

LOC101763219, SETIT_028202mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WRKY

Protein Properties

Length: 292aa MW: 33538.3 Da PI: 6.4523

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G098800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	58.5	1.3e-18	136	202	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE......-SSSTT.EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver......saedpk.vveitYegeHnhe 59 Dg++WrKYGqK+++g+++prsYYrCt+ gC+++k v++ +a+d + + + +Y g+H+++ Seita.8G098800.1.p 136 DGHQWRKYGQKQINGAKYPRSYYRCTYGkeqGCKATKTVQQydpvtnTASDHSiMYKAIYYGRHTCN 202 9***********************977789*****9733322223454425688999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-21	126	202	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-20	129	203	IPR003657	WRKY domain
SMART	SM00774	2.7E-29	134	203	IPR003657	WRKY domain
Pfam	PF03106	1.0E-21	136	201	IPR003657	WRKY domain
PROSITE profile	PS50811	16.409	136	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009863	Biological Process	salicylic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MKHNDSNRYL PKSSVCDDLP HACNHRLVLK EISKEQSLVM QLRAIVLPAL EMNQNSELVS 60 QMFQSILDCS SMVIAELLHC QSDAPAVDML VDDKETVQRI SNDVIEDSAR PQHHHQNKRR 120 RVAESMSFDT PVPHYDGHQW RKYGQKQING AKYPRSYYRC TYGKEQGCKA TKTVQQYDPV 180 TNTASDHSIM YKAIYYGRHT CNFNGNDSGI SIPKDNGETN THRNHDLVHY NNNQCSIVSV 240 TCSHPDDHQT FLDGNVVHDT YGDIIPRNIN MDWQLDTIES VQLDFDNWDW R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	121	KRRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00070	PBM	Transfer from AT5G01900	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G098800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980388.1	0.0	probable WRKY transcription factor 62
TrEMBL	K3ZNM2	0.0	K3ZNM2_SETIT; Uncharacterized protein
STRING	Si028202m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3258	30	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01900.1	8e-22	WRKY DNA-binding protein 62

Link Out ? help Back to Top
Phytozome	Seita.8G098800.1.p
Entrez Gene	101763219