PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G097900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 174aa    MW: 18236.3 Da    PI: 10.4366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G097900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.7e-134989346
                 AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaa 46
                        + GV+ ++ +g+++AeIrd    + k +r++lg+f+t+e Aa aa
  Seita.8G097900.1.p 49 FIGVSKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAA 89
                        67******.**********32..2.24**********99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-104897IPR001471AP2/ERF domain
PROSITE profilePS5103214.714888IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-134989IPR016177DNA-binding domain
PRINTSPR003677.0E-84960IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-174988IPR001471AP2/ERF domain
PfamPF008476.6E-94989IPR001471AP2/ERF domain
CDDcd000183.87E-124988No hitNo description
PRINTSPR003677.0E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEADDESSDS FSSSSPASSS DVEMVSATMS SEQLWQKAST AVKRRPESFI GVSKRPWGKF  60
AAEIRDSTRK GARVWLGTFD TPEAAALAAS PTTRPPSPRA APPPSSTSPS SACGSRWGRS  120
RSPAARGPAW TMAASAARGG IAVSLLRHGG ARGPRLGADY LEELLRVSSE LHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G097900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276832e-67KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685222.14e-39LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF094-like
TrEMBLA0A368S6391e-116A0A368S639_SETIT; Uncharacterized protein
STRINGEMT259622e-19(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.11e-15octadecanoid-responsive Arabidopsis AP2/ERF 59