PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G067000.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 476aa    MW: 52918.1 Da    PI: 10.2228
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G067000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18107195197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk++      ++ rl +p  f ++ ++++++   ++l+ +sg++W+  l  +  s++ ++++GWkeFv ++ +k+g f+vF++dg s+f 
  Seita.8G067000.2.p 107 FFKIFF--PDQSRERLKIPTAFHQHLKEQPTG--LVSLKGPSGNTWQAVL--TSDSEGLFFEQGWKEFVTDHSVKQGHFLVFTYDGLSRF- 190
                         677773..3456678*******9666777766..7***************..********************************998888. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                           v+vf
  Seita.8G067000.2.p 191 -SVTVF 195
                         .66666 PP
2B344.13.8e-14369460398
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         ++++ s+v     + +  +f++e    ++ sk++tl d+ g+ W+v++ y   ++   +++GW +F+  n+L+  D++vF+l ++   + +
  Seita.8G067000.2.p 369 QTMMESYVYVGFFMNITCEFVRESL--PRISKKMTLWDPLGKPWQVNYVYYSDRSVASFSGGWGKFALGNNLEKFDVCVFELFKE--DNIK 455
                         6789999999999999999*98884..56899****************9988888899***********************8764..4457 PP

                         EEEE- CS
                  B3  94 vkvfr 98 
                         v+++r
  Seita.8G067000.2.p 456 VHIYR 460
                         88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-22100196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-19105196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.126105198IPR003340B3 DNA binding domain
PfamPF023625.9E-16107194IPR003340B3 DNA binding domain
SMARTSM010194.1E-13107198IPR003340B3 DNA binding domain
CDDcd100176.48E-17107195No hitNo description
Gene3DG3DSA:2.40.330.102.6E-23358460IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-23360460IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-22365460No hitNo description
PROSITE profilePS5086312.167367462IPR003340B3 DNA binding domain
SMARTSM010199.7E-10367462IPR003340B3 DNA binding domain
PfamPF023621.2E-12369460IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAAGRKKHQG SSGAAAAAAP EKESGKGKGK EKEVREAVGK EAAKEKQKQK GKEKEVREGG  60
KEKSAKEKQK QKGKQNEVRE DGKGKEKAAA KVKQEAAAAA KSAGQQFFKI FFPDQSRERL  120
KIPTAFHQHL KEQPTGLVSL KGPSGNTWQA VLTSDSEGLF FEQGWKEFVT DHSVKQGHFL  180
VFTYDGLSRF SVTVFGSFGV VDPPSLVAKR TNNVVIKIED DEEEVHVDMD AGGTSETSIL  240
PPEEGNGITG KRTREVNDIV ADGNASKRHS SVPKQAEKKS PEAIVRTSKD ASTIVNTEKD  300
TPFSILNEST AFNKTHVRDK NMPKLGKFIV RRARQPVVIS QRRPVTEEEK GLALRRAKEF  360
KSKNPFAVQT MMESYVYVGF FMNITCEFVR ESLPRISKKM TLWDPLGKPW QVNYVYYSDR  420
SVASFSGGWG KFALGNNLEK FDVCVFELFK EDNIKVHIYR VVPEITPLLR ASSRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1234046122142B3 domain-containing transcription factor VRN1
4i1k_B2e-1234046122142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G067000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978926.10.0B3 domain-containing protein Os11g0197600
SwissprotQ2R9D21e-131Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A368S4Y50.0A0A368S4Y5_SETIT; Uncharacterized protein
STRINGSi027380m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]