PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G046300.1.p | ||||||||
Common Name | SETIT_026709mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 29939.9 Da PI: 7.906 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.7e-20 | 106 | 155 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a++ ++g Seita.8G046300.1.p 106 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALGFRG 155 7********.**********7.....337**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-13 | 106 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 106 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 106 | 165 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.291 | 106 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 106 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-12 | 107 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-13 | 114 | 165 | No hit | No description |
PRINTS | PR00367 | 6.3E-12 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MLSGYERSRE AAVMVDALAR VVAGGAPAAG ARQVVSPAGA WPGYDYDALS PSYSAQAHEY 60 GAALATPPQH SPAAAAASPG SSQQIPSPSS ADTSAGRSGG GAPRRRYRGV RQRPWGKWAA 120 EIRDPHKAAR VWLGTFDTAE AAARAYDEAA LGFRGSRAKL NFPESATLRP PSAPQVAAVP 180 PPPPQRPEAL LESQALAAGA GGGEYSEYAR FLQGAGEPPR FFEPTAPAAP GSSSFPVFFS 240 FGGGDGGSDG ASHHPWPPAS TGTSNSGAGH PPPPATWADS GWWPAPPRDP SAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 105 | 163 | 4 | 63 | ATERF1 |
3gcc_A | 1e-21 | 105 | 163 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G046300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003286 | 3e-64 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 3e-64 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 3e-64 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980201.3 | 0.0 | uncharacterized protein LOC101771844 | ||||
TrEMBL | K3ZJF6 | 0.0 | K3ZJF6_SETIT; Uncharacterized protein | ||||
STRING | Si026709m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 2e-15 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G046300.1.p |