PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G036100.1.p

Common Name

LOC101760368, SETIT_026707mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 295aa MW: 32001.8 Da PI: 6.5138

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G036100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.2	2.2e-42	17	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 lppG+rF Pt+eel+++yL+++++g++ ++e++i+ vdiy+++P++L++ + + ++++w+fF++r++++ +g r+ r+t sgyWka Seita.8G036100.1.p 17 LPPGYRFYPTEEELLSFYLRHRLAGTRPQVEHFIPVVDIYSYHPSELQAmagvA--NvgDKEQWFFFCPRAERELHGGRPARTTPSGYWKA 105 79**************************999**********9535532..1335669************************ PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Seita.8G036100.1.p 106 TGSPSYVYSApANRVIGEKRTMVFYEGRAPTGNKTRWKMNEYKA 149 *****988899*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-47	12	184	IPR003441	NAC domain
PROSITE profile	PS51005	47.648	17	185	IPR003441	NAC domain
Pfam	PF02365	2.7E-22	18	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MLLQRTMGSG SSSDPPLPPG YRFYPTEEEL LSFYLRHRLA GTRPQVEHFI PVVDIYSYHP 60 SELQAMAGVA NVGDKEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS YVYSAPANRV 120 IGEKRTMVFY EGRAPTGNKT RWKMNEYKAA ADDCIATAYG APPPLAAGAP VRLRNEFSVC 180 RVYISTGTLR SFDRRPLNPA GGVDQALHCY QQQQVLAPPA AAAAAASQMP AVGVVANGQA 240 AENSHDSTSS ESRGVVVDGA EEDSGATAID WESLADLRFS VVDDLSRVIN WPSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-27	17	183	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-27	17	183	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-27	17	183	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-27	17	183	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-27	17	183	20	166	NAC domain-containing protein 19
3swm_B	3e-27	17	183	20	166	NAC domain-containing protein 19
3swm_C	3e-27	17	183	20	166	NAC domain-containing protein 19
3swm_D	3e-27	17	183	20	166	NAC domain-containing protein 19
3swp_A	3e-27	17	183	20	166	NAC domain-containing protein 19
3swp_B	3e-27	17	183	20	166	NAC domain-containing protein 19
3swp_C	3e-27	17	183	20	166	NAC domain-containing protein 19
3swp_D	3e-27	17	183	20	166	NAC domain-containing protein 19
4dul_A	3e-27	17	183	17	163	NAC domain-containing protein 19
4dul_B	3e-27	17	183	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G036100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978711.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	K3ZJF4	0.0	K3ZJF4_SETIT; Uncharacterized protein
STRING	Si026707m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	6e-65	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Seita.8G036100.1.p
Entrez Gene	101760368

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]