PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G026600.1.p
Common NameSETIT_028262mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 490aa    MW: 53144.6 Da    PI: 6.8163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G026600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.81.2e-87194633374
                GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                         ++L ecA  v++g++e+a + L+r   l a+ dg p+ Rla  ++  La+rl r +v+ +++al   +++  +   + aa++ f+e+sP++
  Seita.8G026600.1.p  19 RALCECAADVEAGSMEKAARWLSRATGLaAATDGGPLPRLAVPVADCLARRLIRpMVPAVADALIDPSDH-LDRRCVRAARRSFFELSPFP 108
                         689*********************9999678888********************8999999988444443.345555678999******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         k +  +aN+ Ilea+e+e+ vH+iDf   + q+ QW+ Ll+ + s peg+p+lR+T v++    ++e l ++ e L + A++l+vp++ + 
  Seita.8G026600.1.p 109 KAAVAVANRVILEAMENEKNVHVIDFAgpAAQPCQWIQLLRDFRSLPEGAPHLRLTIVHD----DEEFLAKVSESLVDEADRLDVPLQVHC 195
                         **************************75589*****************************....9************************** PP

                GRAS 181 lvakrledleleeL....rvkpgEalaVnlvlqlhrll..................................................... 214
                          va ++e+l++++L     +k+gEa a+ + l+lhrll                                                     
  Seita.8G026600.1.p 196 -VAGQIETLDFSDLhgvlGLKSGEARAIVCTLRLHRLLaaadeaassfsaghrsnqtasvarlqqmasnscplsigggaaceeeeedpyyr 285
                         .7999******99966667889********************************************************************* PP

                GRAS 215 ..............desvsleserdevLklvks.lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvEr 287
                                         + +++ +   +L++ +  +sPk+vv++eqea+hn+ sF +rf+eal++y+a++dsl+a +++      er+ vEr
  Seita.8G026600.1.p 286 spatplgfvsppltTPPFQMPPALAGFLSAARAtVSPKIVVLAEQEASHNGVSFRKRFAEALHHYAAVYDSLDAAAAAYRrppAERAEVER 376
                         ************99666777777778*****9538*************************************877665555779******* PP

                GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ++l++ei++++   ga+rrerh +l++W  r+e aGF+ vpls+ a  q + +lr++++ g +  e+ g+l+l+Wk+ pL+svSaWr
  Seita.8G026600.1.p 377 AVLSEEIRDLLLRDGARRRERHDRLHQWALRMEVAGFRGVPLSYIALRQGDDVLRRCGVGGCESREHGGCLLLCWKSWPLYSVSAWR 463
                         **************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.71443IPR005202Transcription factor GRAS
PfamPF035144.2E-8519463IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MRPPPAENGP DRRLAHLGRA LCECAADVEA GSMEKAARWL SRATGLAAAT DGGPLPRLAV  60
PVADCLARRL IRPMVPAVAD ALIDPSDHLD RRCVRAARRS FFELSPFPKA AVAVANRVIL  120
EAMENEKNVH VIDFAGPAAQ PCQWIQLLRD FRSLPEGAPH LRLTIVHDDE EFLAKVSESL  180
VDEADRLDVP LQVHCVAGQI ETLDFSDLHG VLGLKSGEAR AIVCTLRLHR LLAAADEAAS  240
SFSAGHRSNQ TASVARLQQM ASNSCPLSIG GGAACEEEEE DPYYRSPATP LGFVSPPLTT  300
PPFQMPPALA GFLSAARATV SPKIVVLAEQ EASHNGVSFR KRFAEALHHY AAVYDSLDAA  360
AAAYRRPPAE RAEVERAVLS EEIRDLLLRD GARRRERHDR LHQWALRMEV AGFRGVPLSY  420
IALRQGDDVL RRCGVGGCES REHGGCLLLC WKSWPLYSVS AWRPDRGAAY GIGCDYLSLS  480
APPGPVHSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-182346424379Protein SCARECROW
5b3h_D3e-182346424379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G026600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980153.20.0scarecrow-like protein 3
TrEMBLA0A368S3T50.0A0A368S3T5_SETIT; Uncharacterized protein
STRINGSi028262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-60scarecrow-like 3