PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G006900.1.p | ||||||||
Common Name | LOC101769036, SETIT_026651mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 35166.8 Da PI: 7.3697 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Seita.8G006900.1.p 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.2e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l Seita.8G006900.1.p 67 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.042 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.27E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.40E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.74 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.7E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.69E-9 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY 60 LRPGIRRGNF TPHEEGIIVH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKHQ 120 AIGAIFAPPP PSESSSIVPT TAGASHHVDL HHDIIGSKDY NYARPAACSN PDEVTQLIAR 180 RSPFAATDGD SSSSSYASSM DNISKLLNGF MKSSPPPQND ATADIKPSAT DINPLLSFNH 240 MSGGSNTLPP FSDMLPSPPP PQQPALTMGH RGYDNEPKQQ HHQQGPLSPI EKWLFEEAAE 300 QVVDLMDLSD ACCSVPMMF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-25 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G006900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728308 | 1e-154 | KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978476.1 | 0.0 | transcription factor MYB30 | ||||
Swissprot | B3VTV7 | 2e-93 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | K3ZJ98 | 0.0 | K3ZJ98_SETIT; Uncharacterized protein | ||||
STRING | Si026651m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 7e-83 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G006900.1.p |
Entrez Gene | 101769036 |
Publications ? help Back to Top | |||
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