PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G332400.1.p

Common Name

SETIT_010669mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 309aa MW: 32343.2 Da PI: 8.0531

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G332400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.5	2.6e-37	53	112	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+al+cprC+stntkfCyynnys++qPry+CkaCrryWtkGG+lrnvPvGg +rknk++ Seita.7G332400.1.p 53 QEQALNCPRCHSTNTKFCYYNNYSVTQPRYLCKACRRYWTKGGTLRNVPVGGRCRKNKQQ 112 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	51	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.192	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDKIFNTTCN TTMPSTLQNQ QEEAAIPPPA AARNVKKAKQ QQAGGERMPR PQQEQALNCP 60 RCHSTNTKFC YYNNYSVTQP RYLCKACRRY WTKGGTLRNV PVGGRCRKNK QQNPSAPSAL 120 ASSSDSKKIM NSSTQQLLMM MPPPPPPTAA NLSNVLPTTF MSATGVGGGF ELPSSDHHPL 180 PFAPLSLPSN PGTTPPASSF LDLLPFLPTP SSFGAMMLQH GPGMIAGAGG GLQQQWLPSS 240 QHGNDDGGLF AAGGSPAAAA VQEPQQQQEE EVGGGDGGTA ADAAGNDDMG GGGASADIIN 300 IYWSSSRI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G332400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF117793	5e-57	EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684319.1	0.0	dof zinc finger protein PBF-like
TrEMBL	K3Y8X7	0.0	K3Y8X7_SETIT; Uncharacterized protein
STRING	Si010669m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Seita.7G332400.1.p