PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G322700.1.p
Common NameLOC101773189, SETIT_010747mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 292aa    MW: 31073.6 Da    PI: 8.589
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G322700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-1493152155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++ k++g+++A+++d  s+  g  ++ k+++lg++ t+e+Aaka++ a++k++g
  Seita.7G322700.1.p  93 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrkRKgKHVYLGSYVTEEQAAKAHDLAALKYWG 152
                         789******************666696675336*************************98 PP
2AP2538.7e-17197250155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++k +g+W A+I    e +    k ++lg+f+t+eeAa+a++ a+ +l+g
  Seita.7G322700.1.p 197 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFDTEEEAAEAYDIAAIELRG 250
                         67*****999.9******99953323..36*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-1393162IPR016177DNA-binding domain
CDDcd000184.30E-1393164No hitNo description
PfamPF008471.9E-1193152IPR001471AP2/ERF domain
SMARTSM003806.3E-1994168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1294162IPR001471AP2/ERF domain
PROSITE profilePS5103216.88494162IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-18197260IPR016177DNA-binding domain
PfamPF008471.2E-11197250IPR001471AP2/ERF domain
CDDcd000181.92E-22197260No hitNo description
PROSITE profilePS5103219.375198258IPR001471AP2/ERF domain
SMARTSM003801.5E-28198264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-20198258IPR001471AP2/ERF domain
PRINTSPR003679.5E-6199210IPR001471AP2/ERF domain
PRINTSPR003679.5E-6224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATVQPQSPA GPAPSTPQKG RHGDAPNPPA ASGEPPAAAG PGGEIAALDK QLAVGGGGGG  60
EERKPGGGAS AGAGGGGKLV AEAMRKYAAP RSSRFHGVTR LKWSGKYEAH LWDNTSQVEG  120
RKRKGKHVYL GSYVTEEQAA KAHDLAALKY WGTGPNTKLN FSISDYEKEI EIMNTMSQDE  180
FVAYIRRQSS CFSRGTSSYR GVTRRKDGKW QARIGRIGES RDTKDIYLGT FDTEEEAAEA  240
YDIAAIELRG VHAVTNFDIS NYCEDGLRKL EGPSEVAKLE GPSEVMKLAG Q*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G322700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-70AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLK3Y9550.0K3Y955_SETIT; Uncharacterized protein
STRINGSi010747m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.14e-62AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]