PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G320700.2.p
Common NameLOC101765490, SETIT_009752mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 503aa    MW: 57634 Da    PI: 6.8372
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G320700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09288329347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE e++ + v++ G+g Wk  a ++g  +++ ++k+ w+  
  Seita.7G320700.2.p 288 KWTPEEYEIIRRFVEKNGTG-WKELATELG--KSEIHVKDTWRRM 329
                         8*******************.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-6212283IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-6213273IPR009057Homeodomain-like
PROSITE profilePS500905.32215281IPR017877Myb-like domain
CDDcd001670.00577215281No hitNo description
PROSITE profilePS5129410.234283334IPR017930Myb domain
SMARTSM007170.0084285332IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-8287347IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-9288340IPR009057Homeodomain-like
CDDcd001670.00283288330No hitNo description
PfamPF139212.1E-10289347No hitNo description
PROSITE profilePS500908.037331399IPR017877Myb-like domain
SMARTSM007170.015335401IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-8341384IPR009057Homeodomain-like
SuperFamilySSF466891.74E-7379457IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-5385452IPR009057Homeodomain-like
PROSITE profilePS500907.561401454IPR017877Myb-like domain
SMARTSM0071715405456IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MNHSVEIEQA EVLAEMAEKP CLEHAEDIMS KSDVKEDRKK KKKDKEADTI SQKQILDASD  60
VSVGSGYVER NMGKGEHDSM SKKGKRKHRD GETSLNGSCD DQIVSRGDKK KKRNERSITL  120
EEGNEADMSM MGQKTKGKKK RGNERDNVGV DLSQNIPAGN GNSCNKEKKV NVAHGKDKGK  180
RVSFTDDVEV FKIDGGGGDE EGDGSGDSEL VHGQRFTHEE DVKLMEAIQK YSEINQLGDK  240
GLEMIRECKK YPETRGCWAE IAKSLPHRPV MAVYKRARIL LYRSDERKWT PEEYEIIRRF  300
VEKNGTGWKE LATELGKSEI HVKDTWRRMK PKNLKKGTWT QDEYQNLFDL VNLDLRVKAH  360
QKIAPTHRQL RDNISWEAIS EKLTTRNNKD CCLKWYQQLA SPLVKEGIWA DIDDYLLMEA  420
LQKGDAVCFE DVDWERLLDH RSGELCRQRW NQMVRMIGGH REKPFIEQVE VLARRYCPEM  480
LDYRKPEASD LSPDELAGES DS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642DRKKKKK
23743RKKKKKD
33744RKKKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G320700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977530.10.0DNA-binding protein REB1 isoform X1
RefseqXP_004977531.10.0DNA-binding protein REB1 isoform X1
TrEMBLK3Y6B10.0K3Y6B1_SETIT; Uncharacterized protein
STRINGSi009752m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.18e-97MYB_related family protein