PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G320700.1.p
Common NameLOC101765490, SETIT_009752mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 555aa    MW: 63123.1 Da    PI: 7.9448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G320700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09340381347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE e++ + v++ G+g Wk  a ++g  +++ ++k+ w+  
  Seita.7G320700.1.p 340 KWTPEEYEIIRRFVEKNGTG-WKELATELG--KSEIHVKDTWRRM 381
                         8*******************.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-6264335IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-6265325IPR009057Homeodomain-like
PROSITE profilePS500905.32267333IPR017877Myb-like domain
CDDcd001670.00437267333No hitNo description
PROSITE profilePS5129410.234335386IPR017930Myb domain
SMARTSM007170.0084337384IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-8339399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-9340392IPR009057Homeodomain-like
CDDcd001670.00222340382No hitNo description
PfamPF139212.4E-10341399No hitNo description
PROSITE profilePS500908.037383451IPR017877Myb-like domain
SMARTSM007170.015387453IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-8393436IPR009057Homeodomain-like
SuperFamilySSF466892.0E-7431509IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-5437504IPR009057Homeodomain-like
PROSITE profilePS500907.561453506IPR017877Myb-like domain
SMARTSM0071715457508IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MERVSAAEKV VIGSKGEKKG HRSKKDKGKR KGKKDKAQGH GGDGDGSIQS DDMNHSVEIE  60
QAEVLAEMAE KPCLEHAEDI MSKSDVKEDR KKKKKDKEAD TISQKQILDA SDVSVGSGYV  120
ERNMGKGEHD SMSKKGKRKH RDGETSLNGS CDDQIVSRGD KKKKRNERSI TLEEGNEADM  180
SMMGQKTKGK KKRGNERDNV GVDLSQNIPA GNGNSCNKEK KVNVAHGKDK GKRVSFTDDV  240
EVFKIDGGGG DEEGDGSGDS ELVHGQRFTH EEDVKLMEAI QKYSEINQLG DKGLEMIREC  300
KKYPETRGCW AEIAKSLPHR PVMAVYKRAR ILLYRSDERK WTPEEYEIIR RFVEKNGTGW  360
KELATELGKS EIHVKDTWRR MKPKNLKKGT WTQDEYQNLF DLVNLDLRVK AHQKIAPTHR  420
QLRDNISWEA ISEKLTTRNN KDCCLKWYQQ LASPLVKEGI WADIDDYLLM EALQKGDAVC  480
FEDVDWERLL DHRSGELCRQ RWNQMVRMIG GHREKPFIEQ VEVLARRYCP EMLDYRKPEA  540
SDLSPDELAG ESDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894DRKKKKK
28995RKKKKKD
38996RKKKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G320700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977530.10.0DNA-binding protein REB1 isoform X1
RefseqXP_004977531.10.0DNA-binding protein REB1 isoform X1
TrEMBLK3Y6B10.0K3Y6B1_SETIT; Uncharacterized protein
STRINGSi009752m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.13e-96MYB_related family protein