PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G316100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 430aa    MW: 46877 Da    PI: 6.5602
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G316100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.71e-181072332126
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknr.atksgy 82 
                         ppG+rF Pt  el+ +yL++ v++        ++e ++  +d+y+++P +L +   ++ +++ +wyf + ++ k  + g+r +r +   g+
  Seita.7G316100.1.p 107 PPGYRFAPTPRELILYYLNPWVASPAgqtpfGQTEGIVCAADVYSADPGTLTSglrHFGHDDGNWYFLCVARWKDGNaGTRMSRaVQGGGT 197
                         9********************99887776753444567888**********853545555777******9999988769*****4455899 PP

                 NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                         W+ +gk  +v +      g ++t+ +     p g k+ W+m+e 
  Seita.7G316100.1.p 198 WHGSGKRIPVGR-----HGYRQTFEYR---VPGGGKSAWLMEEI 233
                         *****9888877.....79*****995...9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-2397255IPR003441NAC domain
PROSITE profilePS5100523.017106255IPR003441NAC domain
PfamPF023651.4E-13107232IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEFYTCNRVA QGRILAHLGV GPRSPVEIPS STESNSGSRT HAGTQRYNAA IDPHAHLPKF  60
TTHVSRAKSS EHTRPPSKIL KPHPRAVATA GLFEQELMEQ APCPGAPPGY RFAPTPRELI  120
LYYLNPWVAS PAGQTPFGQT EGIVCAADVY SADPGTLTSG LRHFGHDDGN WYFLCVARWK  180
DGNAGTRMSR AVQGGGTWHG SGKRIPVGRH GYRQTFEYRV PGGGKSAWLM EEIGSSLPEA  240
TGGEGVKVLC RVHRTPRAAA DDDANEERQE TDEVVQFRSS KKPRCELRQE HDFAAANYWA  300
AAAPTDVVCS YASTSQTALV NAAAPTTWQQ QPMMEQGVAS YHCTGVNGGV YVKDEQQPLE  360
VLLPDEGWQQ CLEIDYGFDY STEDGLFKKN STGDAQLNDE LMHNTFSCPK PSDGAVRENG  420
DPRGERRAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G316100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978357.10.0NAC domain-containing protein 26
TrEMBLA0A368S1U20.0A0A368S1U2_SETIT; Uncharacterized protein
STRINGSi012013m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-14NAC 007