PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G305500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 672aa MW: 71520.7 Da PI: 6.5333 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 417.3 | 1.3e-127 | 304 | 664 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 +lLl+cAe v++++l a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lpp + + + + +++aa+++f+ +sP++ Seita.7G305500.1.p 304 LTLLLQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPASPAAARlHGRVAAAFQVFNGISPFV 394 579************************************************************77666655548899999*********** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s e+l++tg+rL++fA++lg+pfef + v Seita.7G305500.1.p 395 KFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALQATGKRLSDFADTLGLPFEFCA-V 480 **********************************************************....***************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 a++ ++++e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a Seita.7G305500.1.p 481 AEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDA 564 *************************9..999999999999....**********************.899********************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 +++++s er++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF++++l +aa+qa+lll +++sdgy++ ee+g+l lgWkd Seita.7G305500.1.p 565 SYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRSASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKD 654 *******************************999987.***************************************************** PP GRAS 365 rpLvsvSaWr 374 L+++SaWr Seita.7G305500.1.p 655 LCLLTASAWR 664 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.732 | 277 | 644 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-125 | 304 | 664 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0051457 | Biological Process | maintenance of protein location in nucleus | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MGSSSLLLFP SSSSAASAAY SHATASTSSH SSLLPPLPSS SSSPQDHHLL QYLHHLDQQH 60 QESAAMVRKR PAPDMDLPPP RRHVTGDLSD VTAAAASGGG APPPQSAAAS AQLPALPTQL 120 HLPAFQVQHH HHHHHAEVDA PPAGEVAAST TAWVDGIIRD IIGSSGGAGV SVAQLIHNVR 180 EIIHPCNPGL ASLLELRLRS LLNAADPAAP LHQPLPHPPA LPPVPALPPP PPPQLTVTDK 240 RRHEPQQAGE PTNPSPQQEE PKPPTAEETA AAAAAAAAAA AAAAKERKEE QRRKQRDEEG 300 LHLLTLLLQC AESVNADNLD DAHQTLLEIA ELATPFGTST QRVAAYFAEA MSARLVSSCL 360 GLYAPLPPAS PAAARLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE REERVHIIDL 420 DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALQAT GKRLSDFADT LGLPFEFCAV 480 AEKAGNVDPE KLGVTRREAV AVHWLHHSLY DVTGSDSNTL WLIQRLAPKV VTMVEQDLSH 540 SGSFLARFVE AIHYYSALFD SLDASYGEDS PERHVVEQQL LSREIRNVLA VGGPARTGDV 600 KFGSWREKLA QSGFRSASLA GSAAAQASLL LGMFPSDGYT LVEENGALKL GWKDLCLLTA 660 SAWRPIQTPC R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 287 | 665 | 3 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G305500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063682 | 0.0 | BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977413.1 | 0.0 | protein SCARECROW 1-like | ||||
Swissprot | A2ZHL0 | 0.0 | SCR2_ORYSI; Protein SCARECROW 2 | ||||
Swissprot | Q2QYF3 | 0.0 | SCR2_ORYSJ; Protein SCARECROW 2 | ||||
TrEMBL | A0A368S1R4 | 0.0 | A0A368S1R4_SETIT; Uncharacterized protein | ||||
STRING | ORUFI12G01460.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0122000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G305500.1.p |