PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G302300.1.p
Common NameLOC101773323, SETIT_010832mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 272aa    MW: 30922.9 Da    PI: 6.5083
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G302300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.65.2e-18124187359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59 
                         Dgy+WrKYGqK + ++++ rsYYrC+ +   gC ++k v+++++d++    ++++ Y g+H ++
  Seita.7G302300.1.p 124 DGYQWRKYGQKWISKAKHFRSYYRCANSkgqGCLATKTVQQKETDGSgkvrLFNVDYYGQHICK 187
                         9*************************988889***********99853333899*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-21107187IPR003657WRKY domain
SuperFamilySSF1182901.44E-18116187IPR003657WRKY domain
SMARTSM007743.4E-25122188IPR003657WRKY domain
PfamPF031064.0E-20124187IPR003657WRKY domain
PROSITE profilePS5081115.526124168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNILESSTHG GCQAVINEIE HQRALMMDLH DLILPILDPY SGQEKLVQQL FQDIFSCSSK  60
VISFLELGDN NSGKQANLIK YKRKGSKNNM EGYILEEEPK EVGNKRRKNA QHIGSVVTQA  120
PYFDGYQWRK YGQKWISKAK HFRSYYRCAN SKGQGCLATK TVQQKETDGS GKVRLFNVDY  180
YGQHICKKDG IIHPYVVETT SHSVPIVHDN QSSISTFVNN DVHGIQDESY ENLFVVPDMP  240
EYFTDFTDIE MARALEITSM NLPLISEDIW A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G302300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977388.10.0probable WRKY transcription factor 62 isoform X1
TrEMBLK3Y9E00.0K3Y9E0_SETIT; Uncharacterized protein
STRINGSi010832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.12e-17WRKY DNA-binding protein 62