PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G295600.1.p
Common NameLOC101785719, SETIT_009323mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 890aa    MW: 96596.1 Da    PI: 6.8384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G295600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696957321355
                         HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Seita.7G295600.1.p 695 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 732
                         67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-296154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804682731IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4695740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGFC GHASCSAGSE AAEAGCEPGS  60
GVCTLVRKVM ALQIHVVGEG TIGRAAFTGN HQWIIHDPAN EHSLRSEVSA EMNYQFVAGI  120
QTIAIIPVLP RGVLQLGSTN VVVEDTNLVL QYKKLCSQLN NRSSVASSSS VKNDLNQKVQ  180
SRPLNGPPSI YPADVRPKIF NGSPLTYQQC YGLDATTVSS STLANTGSNA SMLMVAQRNG  240
QMVKEHILYA PDMRFRTQNP YCDRTGESNT QSSVVSSGFV SSISTSMERH PLLMTNTRQL  300
EQGNMGELSD PRNILLKSLA YRNPLVHENT NMTLLHGRSQ VSDFVNGHGG FDFLPEGTRV  360
VKGNLYASTA NQILEQRCSS TSGVTGHKAT ISYKMPQSSQ YVMKMESPKG EAFQASAAVS  420
SASHLSSSLK TAISQGKQMS SSDLAGPGKA NEVQNPADVI VQAVKNMDRR KLPDISNERA  480
PSLLMDPTAE SDLFDMFGSE FHHLRCNVDN DLIGKAAKPE SSNRDAPESS IHVDTSPAFD  540
SVDDEFPYSG IFSLTDTDQL LDAVISNVNP GGKQISGDSA SCKTSVTDIP SSSYCRSKEP  600
KRCESSVAPS SLIKNELAVS NLVKQPSFLE KADDGCLSQN NGIHKSQIRL WIESGQNMKC  660
ESASASNSKG VDTSSKASRK RSRPGENPKP RPKDRQLIQD RIKELRELVP NGAKCSIDAL  720
LEKTIKHMLF LQSVTKHADN LKDSNESKIL GGENGPLKDY FEGGATWAFD VGSQSMTCPI  780
IVEDLDRPRQ MLVEMLCEDR GIFLEIADFI KGLGLTILRG VMEARKNKIW ARFTVEANRD  840
VTRMEIFLSL MRLLEPSCDG GGAGENPNNV KVPLGVVQYP VIPATGHLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G295600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977333.10.0transcription factor LHW
TrEMBLK3Y5350.0K3Y535_SETIT; Uncharacterized protein
STRINGSi009323m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-51conserved peptide upstream open reading frame 7