PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G290600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 349aa    MW: 36474.3 Da    PI: 6.5224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G290600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19168217255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Seita.7G290600.1.p 168 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDGAALRFRG 217
                         8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-22167227No hitNo description
PROSITE profilePS5103225.659168225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32168227IPR001471AP2/ERF domain
SMARTSM003802.5E-36168231IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22168227IPR016177DNA-binding domain
PfamPF008475.2E-13168217IPR001471AP2/ERF domain
PRINTSPR003678.3E-12169180IPR001471AP2/ERF domain
PRINTSPR003678.3E-12191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MCHAAVADPG EQHGRRLLAA GDDGGGGGGD RRQQQLPAMM ETTLPSSSPS PSPAALSRGR  60
QAREMSAMVA ALARVVAGSA PPAKRPHQAV QEEEAWWPYD ELVAEPSPAF VLDGYGATQP  120
PPEQCWPPAA TEAATSSQTQ YRAAAADEEL TSPSSAGAGG SRAAPRKRYR GVRQRPWGKW  180
AAEIRDPHKA ARVWLGTFDT AEAAARAYDG AALRFRGSRA KLNFPESATL PSPPPPDPAS  240
RPWPPPPSRP DALLESQAPH TGGLEPYAEY ARILQSAGGD DPGGSSSSTL PPPPPPAAAY  300
SFTADGDTRL SMLSPLQSRG AGAPGNPAAA WASHYYGSNP LWQWDQSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22167225463ATERF1
3gcc_A1e-22167225463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G290600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071252e-78AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
GenBankAL7139022e-78AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448742e-78AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-78AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126202e-78CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063552e-78CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978318.20.0ethylene-responsive transcription factor ABI4-like
TrEMBLA0A368S0Z40.0A0A368S0Z4_SETIT; Uncharacterized protein
STRINGPavir.J04335.1.p9e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-25related to AP2 6