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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Seita.7G285100.1.p | ||||||||
| Common Name | LOC101782901, SETIT_012017mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family | MYB | ||||||||
| Protein Properties | Length: 221aa MW: 24047 Da PI: 8.5864 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl
Seita.7G285100.1.p 14 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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| 2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T+eEd+l++++++ lG++ W+ Ia +++ gRt++++k++w+++
Seita.7G285100.1.p 67 RGNFTEEEDDLIIKLHQILGNK-WSQIAGRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 16.922 | 9 | 61 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.29E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 5.17E-11 | 16 | 61 | No hit | No description |
| PROSITE profile | PS51294 | 28.414 | 62 | 116 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 6.9E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 6.7E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.87E-13 | 69 | 112 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 221 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDDLIIK LHQILGNKWS QIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPKTHRPLS VTAAAAAAPS SRPEDQPAAR SSCSPETSGA CCHNSDDDSV SAPHHGGIDL 180 NLAISPPRDP PSPSPLPTAT QEAEATSSAT VEETTPTRKS * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 2e-31 | 14 | 116 | 7 | 108 | B-MYB |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Seita.7G285100.1.p |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AM156905 | 1e-155 | AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene). | |||
| GenBank | EU963911 | 1e-155 | EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds. | |||
| GenBank | HQ858692 | 1e-155 | HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004977237.1 | 1e-161 | myb-related protein Zm38 | ||||
| Swissprot | Q9SZP1 | 2e-88 | MYB4_ARATH; Transcription repressor MYB4 | ||||
| TrEMBL | K3YCR7 | 1e-160 | K3YCR7_SETIT; Uncharacterized protein | ||||
| STRING | Si012017m | 1e-161 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP116 | 37 | 448 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38620.1 | 2e-88 | myb domain protein 4 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Seita.7G285100.1.p |
| Entrez Gene | 101782901 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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