PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G279500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28628.9 Da PI: 10.2563 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 24 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l ++v+ +G+ +W++Ia+++ gR++k+c++rw++ Seita.7G279500.1.p 24 RGHWRPGEDDKLRQLVENYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 69 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.5e-18 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ + Seita.7G279500.1.p 76 RRPFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 120 679*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.731 | 19 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-29 | 22 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-13 | 23 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 25 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.17E-13 | 27 | 68 | No hit | No description |
Pfam | PF13921 | 4.4E-16 | 27 | 87 | No hit | No description |
PROSITE profile | PS51294 | 26.044 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-12 | 78 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 78 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAPSSSTTAT PVRANSRPPS SCPRGHWRPG EDDKLRQLVE NYGPQNWNSI AEKLEGRSGK 60 SCRLRWFNQL DPRINRRPFT AAEEERLLQA HRAHGNRWAL ISRLFPGRTD NAVKNHWHVV 120 MARRSHHHHR SAGTLALLAG SVYSPPPRRP PFQCFHFGAP PAAMKTTGSL SLCFATPGSG 180 PSSSLSSPGT FSVIRNCNVP TTVAFSSSRE VAATPDDHRH DMGRDDHGHR KDDDEDGDGT 240 ASKRKDVDVP FFDFLGVGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-30 | 24 | 124 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-30 | 24 | 124 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-30 | 24 | 124 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G279500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972498 | 1e-105 | EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978299.1 | 0.0 | transcription factor MYB52 | ||||
TrEMBL | A0A368S0I0 | 0.0 | A0A368S0I0_SETIT; Uncharacterized protein | ||||
STRING | Si011791m | 1e-174 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 6e-60 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G279500.1.p |