PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G273900.1.p | ||||||||
Common Name | SETIT_012018mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 25454.8 Da PI: 9.4803 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130 | 1e-40 | 59 | 158 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ Seita.7G273900.1.p 59 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALE 149 7****************************************************************************************** PP DUF260 92 aelallkee 100 aela++++e Seita.7G273900.1.p 150 AELATVRAE 158 *****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.397 | 58 | 159 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-40 | 59 | 156 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSTASEWPDH ELGKKIKRES ALAAADRMMT AARRSCSLPA GAGAVAGAGP GSALNTITPC 60 AACKLLRRRC AQECPFSPYF SPLEPHKFAA VHKVFGASNV SKMLLEVHES QRADAANSLV 120 YEANLRLRDP VYGCMGAILT LQQQVQALEA ELATVRAEIV RHRYRPATAS AAVATVLPSS 180 HASQLLAASA ASRGMHAGSR SVRTRTATLA AAASSSSSSA VYAAASSSTD YSSITNENVP 240 YFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 59 | 162 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 59 | 162 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G273900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-142 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977134.1 | 1e-176 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 3e-73 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A368S0C8 | 1e-175 | A0A368S0C8_SETIT; Uncharacterized protein | ||||
STRING | Si012018m | 1e-172 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-60 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G273900.1.p |
Publications ? help Back to Top | |||
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