PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G273100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 265aa    MW: 28374.5 Da    PI: 10.1444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G273100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-1171116454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+e+ErrRR+riN  ++ Lr+++P a     + ++Ka+ L ++v  +k+L
  Seita.7G273100.1.p  71 VHSEAERRRRERINAHLAALRRMIPDA-----RQMDKATLLARVVCQLKDL 116
                         59************************9.....7899999999999887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.37367116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1170121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1270125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-871116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-1073122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-6158218No hitNo description
SuperFamilySSF550211.1E-5159218No hitNo description
CDDcd048732.76E-7159225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MATASACQPF QEGKQRRQHP PLHHGGSVLP PVYKGTALPL RQASSVPHPA AQELPPSLSG  60
RSATEAQAMK VHSEAERRRR ERINAHLAAL RRMIPDARQM DKATLLARVV CQLKDLKRKA  120
AETTHPLPIP AEANGITVNC HTGGGAAGYG RPAAYIRASV SCDDRPGLLA DLAGALRGLR  180
LRPLRADMAS LGGRARCEFV LCGEEGGAAI AGRVKALEEG VRRALVSAAF PETAYGCNYR  240
SRRQRVLESH CVLGHELDLG DQGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G273100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978282.10.0transcription factor bHLH51
TrEMBLA0A368S0B80.0A0A368S0B8_SETIT; Uncharacterized protein
STRINGSi012213m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-17bHLH family protein